View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20593_low_34 (Length: 220)
Name: NF20593_low_34
Description: NF20593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20593_low_34 |
 | |
|
| [»] scaffold0370 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0370 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 12036 - 11829
Alignment:
| Q |
13 |
atactatatattatataccggtttctttgcaattttgtcggtgatttcagaaatgtcttgatttattttcattactatgttctcttcctttctgatttta |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12036 |
atactatatattatataccgttttctttgcaattttgtcggtgatttcagaaatgtcttgatttattttcattactatgttctcttcctttctgatttta |
11937 |
T |
|
| Q |
113 |
gagatcgaatctggttctgttggccaaagcctaacaaagtagaattgatgaacaagttttgaaacatgccctgaattgtcttccttattctccatgatgt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11936 |
gagatcgaatctggttctgttggccaaagcttaacaaagtagaattgatgaacaagttttgaaacatgccctgaattgtcttccttattctccatgatgt |
11837 |
T |
|
| Q |
213 |
tattgtta |
220 |
Q |
| |
|
|||||||| |
|
|
| T |
11836 |
tattgtta |
11829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 38632997 - 38632828
Alignment:
| Q |
19 |
tatattatataccggtttctttgcaattttgtcggtgatttcagaaatgtcttgatttattttcattactatgttctcttcctttctgattttagagatc |
118 |
Q |
| |
|
||||| ||||||| ||||| || ||||| || |||| |||| ||||||| || || | |||||||| | ||||||||||||| ||||||||| ||| |
|
|
| T |
38632997 |
tatataatataccattttctctgtgattttttcagtgacttcacaaatgtcctggttcaatttcattagcacgttctcttcctttttgattttagtgatt |
38632898 |
T |
|
| Q |
119 |
gaatctggttctgttggccaaagcctaacaaagtagaattgatgaacaagttttgaaacatgccctgaat |
188 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||||||||||||||||| || | ||||||||||| |||||| |
|
|
| T |
38632897 |
gaatctggatctgttggccaaagctttacaaagtagaattgatgaaaaattcttgaaacatgctctgaat |
38632828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 38637000 - 38636830
Alignment:
| Q |
18 |
atatattatataccggtttctttgcaattttgtcggtgatttcagaaatgtcttgatttattttcattactatgttctcttcctttctgattttagagat |
117 |
Q |
| |
|
|||||||||||||| |||||||| || | || ||||||||| ||||||| ||||| |||||| | | | ||||||||||||| | ||||||||||| |
|
|
| T |
38637000 |
atatattatataccattttctttgtgatactttctgtgatttcacaaatgtcctgattcattttcttgatcaagttctcttccttttttattttagagat |
38636901 |
T |
|
| Q |
118 |
cgaatctggttctgttggccaaagcctaacaaagtagaattgatgaacaagttttgaaacatgccctgaat |
188 |
Q |
| |
|
|||| ||| |||||||| |||||| | |||||||||||||| ||| ||| | ||||||||||| |||||| |
|
|
| T |
38636900 |
ggaatttggatctgttggacaaagctttacaaagtagaattgttgagcaattcttgaaacatgctctgaat |
38636830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University