View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20593_low_35 (Length: 219)

Name: NF20593_low_35
Description: NF20593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20593_low_35
NF20593_low_35
[»] chr8 (7 HSPs)
chr8 (15-202)||(27128888-27129075)
chr8 (27-120)||(24962337-24962430)
chr8 (27-120)||(43191449-43191542)
chr8 (27-120)||(43980555-43980648)
chr8 (27-120)||(34157958-34158051)
chr8 (27-90)||(33385317-33385380)
chr8 (27-120)||(26878700-26878793)
[»] chr5 (5 HSPs)
chr5 (27-120)||(4857464-4857557)
chr5 (27-120)||(27642543-27642636)
chr5 (27-120)||(39690456-39690549)
chr5 (27-107)||(38972097-38972177)
chr5 (27-107)||(10523244-10523324)
[»] chr1 (10 HSPs)
chr1 (27-107)||(291605-291685)
chr1 (66-120)||(40702458-40702512)
chr1 (27-120)||(32152198-32152291)
chr1 (16-109)||(40612918-40613011)
chr1 (27-120)||(15179450-15179543)
chr1 (27-120)||(15512751-15512844)
chr1 (27-120)||(28948934-28949027)
chr1 (27-107)||(8877825-8877905)
chr1 (27-107)||(8984631-8984711)
chr1 (27-120)||(3831087-3831180)
[»] chr6 (3 HSPs)
chr6 (27-120)||(19838972-19839065)
chr6 (66-120)||(31152999-31153053)
chr6 (27-107)||(197423-197503)
[»] chr4 (8 HSPs)
chr4 (28-107)||(3684159-3684239)
chr4 (27-121)||(37625096-37625190)
chr4 (27-120)||(20291381-20291474)
chr4 (53-120)||(12624737-12624804)
chr4 (64-118)||(5168022-5168076)
chr4 (33-107)||(14602632-14602706)
chr4 (16-113)||(41459635-41459732)
chr4 (27-107)||(29584948-29585028)
[»] chr2 (8 HSPs)
chr2 (14-110)||(2654352-2654448)
chr2 (27-120)||(17663665-17663758)
chr2 (27-120)||(43709960-43710053)
chr2 (16-120)||(16808783-16808887)
chr2 (16-120)||(16848064-16848168)
chr2 (27-105)||(2917072-2917150)
chr2 (53-121)||(26512111-26512179)
chr2 (27-107)||(28733877-28733957)
[»] chr3 (7 HSPs)
chr3 (66-108)||(44647828-44647870)
chr3 (63-110)||(383656-383703)
chr3 (27-118)||(51263124-51263215)
chr3 (27-120)||(48903056-48903149)
chr3 (66-110)||(38668536-38668580)
chr3 (27-107)||(44338134-44338214)
chr3 (27-107)||(50363080-50363160)
[»] scaffold0005 (1 HSPs)
scaffold0005 (33-107)||(214672-214746)
[»] chr7 (5 HSPs)
chr7 (53-119)||(23876079-23876145)
chr7 (66-107)||(26830132-26830173)
chr7 (63-107)||(6376140-6376184)
chr7 (27-107)||(21388296-21388376)
chr7 (27-107)||(40263765-40263845)
[»] scaffold0116 (1 HSPs)
scaffold0116 (66-110)||(5903-5947)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-100; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 27129075 - 27128888
Alignment:
Q  15 caaatataaccgtaattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27129075 caaatataaccgtaattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcat 27128976  T
Q  115 aaaataaggaggggaggtgtaattttcaatctacaaattataagactatgcttgaattattaaaaatcacaacaaccaccatgtttgt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27128975 aaaataaggaggggaggtgtaattttcaatctacaaattataatactatgcttgaattattaaaaatcacaacaaccaccatgtttgt 27128888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 24962337 - 24962430
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 120  Q
    |||||||| || |||| || ||||  ||||||||| |||||||| |||| ||||| |||||||  |||||||||||||||| || |||||||||    
T  24962337 taattaatcctactaatttgtcttgaaatacaaaaagttaaatttaatacacatacaaacaaaggacaatttagtaatattaacacataaaata 24962430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 43191449 - 43191542
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 120  Q
    |||||||| || ||||||||||||  ||||  |||  ||||||| |||| ||||| |||||||| |||||||||||||||| || |||||||||    
T  43191449 taattaatcctactaacttatcttgaaatatgaaaatttaaatttaatacacatacaaacaaatgacaatttagtaatattaacacataaaata 43191542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 43980555 - 43980648
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 120  Q
    |||||||| || |||| |||||||  ||||||||| || ||||| |||| ||||| |||||||| | |||||||||||||| || |||||||||    
T  43980555 taattaatcctactaatttatcttgaaatacaaaaagtcaaatttaatacacatacaaacaaatgataatttagtaatattaacacataaaata 43980648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 34158051 - 34157958
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 120  Q
    |||||||| || |||| || ||||  ||||||||| |  ||||| |||| ||||| |||||||| |||||||||||||||| || |||||||||    
T  34158051 taattaatcctactaatttgtcttaaaatacaaaaagccaaatttaatacacatacaaacaaatgacaatttagtaatattaacacataaaata 34157958  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 33385380 - 33385317
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaat 90  Q
    ||||||||||| ||||||| ||||  ||||| ||| || ||||| |||||||||||||||||||    
T  33385380 taattaatactactaacttgtcttgaaatacgaaaagtcaaatttaatatacatataaacaaat 33385317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 26878700 - 26878793
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 120  Q
    ||||||||||| ||||||||||||  ||||   || || ||||| |||||||||| |||||||  ||||||| |||||||| || || ||||||    
T  26878700 taattaatactactaacttatcttgaaatatgtaaagtcaaatttaatatacatacaaacaaaggacaatttggtaatattaacacacaaaata 26878793  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 4857464 - 4857557
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 120  Q
    ||||||||||| ||||||||||||  ||||  ||| || ||||| |||| ||||| |||||||| |||||||||||||||| || |||||||||    
T  4857464 taattaatactactaacttatcttaaaatatgaaaagtcaaatttaatacacatacaaacaaatgacaatttagtaatattaacacataaaata 4857557  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 27642636 - 27642543
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 120  Q
    |||||||| || |||| |||||||  ||||||||| || ||||| |||| ||||| |||||||  | |||||||||||||| || |||||||||    
T  27642636 taattaatcctactaatttatcttgaaatacaaaaagtcaaatttaatacacatacaaacaaaggataatttagtaatattaacacataaaata 27642543  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 39690456 - 39690549
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 120  Q
    |||||||| || |||| || ||||  ||||||||| || ||||| |||| ||||| |||||||  |||||||||||||||| || |||||||||    
T  39690456 taattaatcctactaatttgtcttgaaatacaaaaagtcaaatttaatacacatacaaacaaaggacaatttagtaatattaacacataaaata 39690549  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 38972097 - 38972177
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 107  Q
    ||||||||||| ||||||||||||  |||| |||| || ||||| |||| ||||| |||||||  ||||||| ||||||||    
T  38972097 taattaatactactaacttatcttgaaatataaaaagtcaaatttaatacacatacaaacaaaggacaatttggtaatatt 38972177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 10523244 - 10523324
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 107  Q
    ||||||||||| ||||||| ||||  |||| |||  || ||||| |||| ||||| ||||||| |||||||| ||||||||    
T  10523244 taattaatactactaacttgtcttgaaatataaatagtcaaatttaatacacataaaaacaaaaaacaatttggtaatatt 10523324  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 291605 - 291685
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 107  Q
    ||||||||||| ||||||||||||  |||| |||| |||||||| |||| | ||| |||||||| ||||||||||||||||    
T  291605 taattaatactactaacttatcttaaaatataaaaagttaaatttaatacaaatacaaacaaatgacaatttagtaatatt 291685  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 40702512 - 40702458
Alignment:
Q  66 aaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 120  Q
    ||||| |||| ||||||||||||| ||||||||| ||||||||||||||||||||    
T  40702512 aaattcaatacacatataaacaaaaaacaatttaataatattcacgcataaaata 40702458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 32152291 - 32152198
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 120  Q
    ||||||||||| ||||||||||||  ||||  ||| || ||||| |||| ||||| |||||||||||||||| |||||||| || || ||||||    
T  32152291 taattaatactactaacttatcttaaaatatgaaaagtcaaatttaatacacatacaaacaaataacaatttggtaatattaacacacaaaata 32152198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 40612918 - 40613011
Alignment:
Q  16 aaatataaccgtaattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattca 109  Q
    |||||||||| ||||||||||| |||||||||  |  ||||  ||| || |||||||||| |||| |||||||| || ||||||||||||||||    
T  40612918 aaatataaccctaattaatactactaacttataatgaaatatgaaaagtcaaattaaatacacatttaaacaaagaataatttagtaatattca 40613011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 15179543 - 15179450
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 120  Q
    |||||||| || ||||||| ||||  ||||| ||| || ||||| |||| ||||| |||||||  ||||||| |||||||| ||||||||||||    
T  15179543 taattaatcctactaacttgtcttgaaatacgaaaagtcaaatttaatacacatacaaacaaaggacaattttgtaatatttacgcataaaata 15179450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 15512751 - 15512844
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 120  Q
    |||||||| || |||| || ||||  ||||||||| || ||||| |||| ||||| |||||||  |||||||||||||||| || |||||||||    
T  15512751 taattaatcctactaatttgtcttgaaatacaaaaagtcaaatttaatacacatacaaacaaaggacaatttagtaatattaacacataaaata 15512844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 28948934 - 28949027
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 120  Q
    |||||||| || |||| || ||||  ||||||||| || ||||| |||| ||||| |||||||  |||||||||||||||| || |||||||||    
T  28948934 taattaatcctactaatttgtcttgaaatacaaaaagtcaaatttaatacacatacaaacaaaggacaatttagtaatattaacacataaaata 28949027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 8877905 - 8877825
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 107  Q
    ||||||||||| ||| ||||||||  |||| |||| || ||||| |||| ||||| |||||||| ||||||| ||||||||    
T  8877905 taattaatactactatcttatcttgaaatataaaaagtcaaatttaatacacatacaaacaaatgacaatttcgtaatatt 8877825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 8984631 - 8984711
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 107  Q
    ||||||||||| |||| |||||||  ||||  ||| || ||||| |||| ||||| |||||||| ||||||||||||||||    
T  8984631 taattaatactactaatttatcttgaaatatgaaaagtcaaatttaatacacatacaaacaaatgacaatttagtaatatt 8984711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 3831180 - 3831087
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 120  Q
    ||||||||||||||| ||| ||||  ||||  ||| || ||||| || ||||||| |||||||| ||||||| |||||||| || || ||||||    
T  3831180 taattaatacttctatcttgtcttgaaatatgaaaagtcaaatttaacatacatacaaacaaatgacaatttcgtaatattaacacacaaaata 3831087  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 19839065 - 19838972
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 120  Q
    |||||||| || |||| |||||||  ||||||||| || ||||| |||| ||||| |||||||  |||||||||||||||| || |||||||||    
T  19839065 taattaatcctactaatttatcttgaaatacaaaaagtcaaatttaatacacatacaaacaaaggacaatttagtaatattaacacataaaata 19838972  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 31152999 - 31153053
Alignment:
Q  66 aaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 120  Q
    ||||| |||| ||||| ||||||||||||||||||||||||| ||  ||||||||    
T  31152999 aaatttaatacacatacaaacaaataacaatttagtaatattgacatataaaata 31153053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 197423 - 197503
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 107  Q
    ||||||||||| ||||||| ||||  |||  ||||  ||||||| |||| ||||| |||||||| |||||||| |||||||    
T  197423 taattaatactactaacttgtcttaaaattgaaaaaattaaatttaatacacatacaaacaaatgacaatttaataatatt 197503  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 3684159 - 3684239
Alignment:
Q  28 aattaatacttctaacttatcttctaatac-aaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 107  Q
    |||||||||| ||||||||||||  ||||  |||| |||||||| ||||||||||||||||||| | |||||| |||||||    
T  3684159 aattaatactactaacttatcttgaaatatgaaaacgttaaatttaatatacatataaacaaatgataatttaataatatt 3684239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 37625096 - 37625190
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaataa 121  Q
    ||||||||||| |||||| |||||  ||||  ||| || ||||| |||| |||||||||||||| | |||||||||||||| || || |||||||    
T  37625096 taattaatactactaactaatcttgaaatatgaaaagtcaaatttaatacacatataaacaaatgataatttagtaatattaacacacaaaataa 37625190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 20291474 - 20291381
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 120  Q
    ||||||||||| ||||||||||||  ||||  ||| || ||||| |||| ||||| |||||||| | |||||||||||||| || || ||||||    
T  20291474 taattaatactactaacttatcttgaaatatgaaaagtcaaatttaatacacatacaaacaaatgataatttagtaatattaacccacaaaata 20291381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 12624804 - 12624737
Alignment:
Q  53 aatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 120  Q
    ||||||||| || ||||| |||| ||||| |||||||  |||||||||||||||| || |||||||||    
T  12624804 aatacaaaaagtcaaatttaatacacatacaaacaaaggacaatttagtaatattaacacataaaata 12624737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 5168076 - 5168022
Alignment:
Q  64 ttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaa 118  Q
    ||||||| |||| ||||| |||||||| |||||||||||||||| ||||| ||||    
T  5168076 ttaaatttaatacacatacaaacaaatgacaatttagtaatattaacgcacaaaa 5168022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 14602632 - 14602706
Alignment:
Q  33 atacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 107  Q
    ||||| ||||||||||||  |||| |||| || ||||| |||| ||||| |||||||| ||||||| ||||||||    
T  14602632 atactactaacttatcttaaaatataaaaagtcaaatttaatacacatacaaacaaatgacaatttggtaatatt 14602706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 41459732 - 41459635
Alignment:
Q  16 aaatataaccgtaattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgca 113  Q
    ||||| |||| ||||||||||| ||||||| || |  ||||  ||| || ||||| |||| ||||||||| |||  |||||||||||||||| |||||    
T  41459732 aaatacaaccctaattaatactactaacttgtcatgaaatatgaaaagtcaaatttaatacacatataaataaaagacaatttagtaatattaacgca 41459635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 29585028 - 29584948
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 107  Q
    |||||||||||  |||||| ||||  |||| |||| || ||||| |||| ||||| |||||||| ||||||| ||||||||    
T  29585028 taattaatactattaacttgtcttaaaatataaaaagtcaaatttaatacacatacaaacaaatgacaatttggtaatatt 29584948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 2654448 - 2654352
Alignment:
Q  14 tcaaatataaccgtaattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcac 110  Q
    ||||| |||||| |||||||||||  |||||||||||  ||||  |||  | |||||||||| |||||||||||||  |||||||||||| ||||||    
T  2654448 tcaaacataaccctaattaatactattaacttatcttaaaatatgaaaaatcaaattaaatacacatataaacaaaagacaatttagtaacattcac 2654352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 17663758 - 17663665
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 120  Q
    |||||||| || |||| || ||||  ||||||||| || ||||| |||| ||||| |||||||  |||||||||||||||| || |||||||||    
T  17663758 taattaatcctactaatttgtcttgaaatacaaaaagtcaaatttaatacacatacaaacaaaggacaatttagtaatattaacacataaaata 17663665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 43710053 - 43709960
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 120  Q
    ||||||||||| ||||||||||||  |||| |||| || || || |||| |||||||||||||  |||||| ||||||||| || || ||||||    
T  43710053 taattaatactactaacttatcttgaaatataaaaagtaaattttaatacacatataaacaaaggacaattaagtaatattaacacacaaaata 43709960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 16808783 - 16808887
Alignment:
Q  16 aaatataaccgtaattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcata 115  Q
    ||||||| || ||||| ||||| ||||||| ||||  ||||  |||  |||| || |||||||||| |||||||| |||||||||||||||| |  ||||    
T  16808783 aaatatatccctaatttatactactaacttgtcttgaaatatgaaaaattaattttaatatacatacaaacaaatgacaatttagtaatattaatacata 16808882  T
Q  116 aaata 120  Q
    |||||    
T  16808883 aaata 16808887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 16848064 - 16848168
Alignment:
Q  16 aaatataaccgtaattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcata 115  Q
    ||||||| || ||||| ||||| ||||||| ||||  ||||  |||  |||| || |||||||||| |||||||| |||||||||||||||| |  ||||    
T  16848064 aaatatatccctaatttatactactaacttgtcttgaaatatgaaaaattaattttaatatacatacaaacaaatgacaatttagtaatattaatacata 16848163  T
Q  116 aaata 120  Q
    |||||    
T  16848164 aaata 16848168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 2917072 - 2917150
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaata 105  Q
    ||||||||||| ||||||| ||||  |||| |||| |||||||| |||| ||||| |||||||  |||||||| |||||    
T  2917072 taattaatactactaacttgtcttaaaatataaaaagttaaatttaatacacatacaaacaaaagacaatttattaata 2917150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 26512179 - 26512111
Alignment:
Q  53 aatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaataa 121  Q
    |||| |||| || ||||| |||| ||||| |||||||  |||||||||||||||| || ||||||||||    
T  26512179 aatataaaaagtcaaatttaatacacatacaaacaaaggacaatttagtaatattaacacataaaataa 26512111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 28733957 - 28733877
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 107  Q
    ||||||||||| |||| |||||||  |||| |||| || |||||  ||| ||||| |||||||| ||||||| ||||||||    
T  28733957 taattaatactactaatttatcttgaaatataaaaagtcaaattttatacacatacaaacaaatgacaatttggtaatatt 28733877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 44647870 - 44647828
Alignment:
Q  66 aaattaaatatacatataaacaaataacaatttagtaatattc 108  Q
    |||||||||| |||||||||||||| |||||||||||||||||    
T  44647870 aaattaaatacacatataaacaaatgacaatttagtaatattc 44647828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 383703 - 383656
Alignment:
Q  63 gttaaattaaatatacatataaacaaataacaatttagtaatattcac 110  Q
    ||||||||||||| |||||||||||||| | |||||||||| ||||||    
T  383703 gttaaattaaatacacatataaacaaatgataatttagtaaaattcac 383656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 51263215 - 51263124
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaa 118  Q
    ||||||||||| ||||||||||||  ||||  ||| || ||||| |||| ||||| |||||||  |||||||||||||| | || |||||||    
T  51263215 taattaatactactaacttatctttaaatatgaaaagtcaaatttaatacacatacaaacaaaggacaatttagtaatactaacacataaaa 51263124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 48903056 - 48903149
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaata 120  Q
    ||||||||||| |||| || ||||  ||||  ||| || ||||| |||||| ||| |||||||| |||||||||||||||| || || ||||||    
T  48903056 taattaatactactaatttttcttgaaatattaaaagtcaaatttaatatatatacaaacaaatgacaatttagtaatattaacacacaaaata 48903149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 38668536 - 38668580
Alignment:
Q  66 aaattaaatatacatataaacaaataacaatttagtaatattcac 110  Q
    |||||||||| ||||||||| |||| |||||||||||| ||||||    
T  38668536 aaattaaatacacatataaataaatgacaatttagtaaaattcac 38668580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 44338214 - 44338134
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 107  Q
    ||||||||| | ||||||||||||  |||| |||| || ||||| |||| ||||| |||||||  ||||||| ||||||||    
T  44338214 taattaatagtactaacttatcttgaaatataaaaagtcaaatttaatacacatagaaacaaaggacaatttggtaatatt 44338134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 50363160 - 50363080
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 107  Q
    ||||||||||| ||||||| ||||  ||||  ||| || ||||| |||| ||||| |||||||| ||||||| ||||||||    
T  50363160 taattaatactactaacttgtcttgaaatatgaaaagtcaaatttaatacacatacaaacaaatgacaatttggtaatatt 50363080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 214746 - 214672
Alignment:
Q  33 atacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 107  Q
    ||||| ||||||||||||  |||| |||| || ||||| |||| ||||| |||||||| ||||||| ||||||||    
T  214746 atactactaacttatcttaaaatataaaaagtcaaatttaatacacatacaaacaaatgacaatttggtaatatt 214672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 23876145 - 23876079
Alignment:
Q  53 aatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatattcacgcataaaat 119  Q
    ||||| ||| |||||||| |||| ||||| |||||||  |||||||||||||||| || ||||||||    
T  23876145 aatacgaaaagttaaatttaatacacatacaaacaaaagacaatttagtaatattaacacataaaat 23876079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 26830132 - 26830173
Alignment:
Q  66 aaattaaatatacatataaacaaataacaatttagtaatatt 107  Q
    |||||||||| |||||||||||||| | ||||||||||||||    
T  26830132 aaattaaatacacatataaacaaatgataatttagtaatatt 26830173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 6376140 - 6376184
Alignment:
Q  63 gttaaattaaatatacatataaacaaataacaatttagtaatatt 107  Q
    |||||||| |||| ||||| |||||||| ||||||||||||||||    
T  6376140 gttaaatttaatacacatacaaacaaatgacaatttagtaatatt 6376184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 21388376 - 21388296
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 107  Q
    ||||||||||| ||||||||||||  |||   ||| || ||||| |||| ||||| |||||||  ||||||||||||||||    
T  21388376 taattaatactactaacttatcttaaaatttgaaaagtcaaatttaatacacatacaaacaaaggacaatttagtaatatt 21388296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 40263845 - 40263765
Alignment:
Q  27 taattaatacttctaacttatcttctaatacaaaatgttaaattaaatatacatataaacaaataacaatttagtaatatt 107  Q
    ||||||||||| ||| ||||||||  ||||  ||| || ||||| |||| ||||| |||||||| ||||||| ||||||||    
T  40263845 taattaatactactatcttatcttgaaatatgaaaagtcaaatttaatacacatacaaacaaatgacaattttgtaatatt 40263765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 5903 - 5947
Alignment:
Q  66 aaattaaatatacatataaacaaataacaatttagtaatattcac 110  Q
    |||||||||| |||||| |||||| ||||||||||||| ||||||    
T  5903 aaattaaatacacatatgaacaaagaacaatttagtaaaattcac 5947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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