View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20593_low_5 (Length: 528)
Name: NF20593_low_5
Description: NF20593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20593_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 19 - 511
Target Start/End: Original strand, 1000291 - 1000783
Alignment:
| Q |
19 |
catagctaccttaggcatcaagttttcagcaacatcagcctgagttatgtcggtctcttccaacaagcatcgaaccgtcttgaacaaaggatgagattca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1000291 |
catagctaccttaggcatcaagttttcagcaacatcagcctgagttatgttggtctcttccaacaagcatcgaaccgtcttgaacaaaggatgagattca |
1000390 |
T |
|
| Q |
119 |
atactcagataactcattgctagcattttgaatccatcaaaaccacaataagacaactcaatatgcatgcatgtccattcgtccacgacgaatcaaagct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1000391 |
atactcagataactcattgctagcattttgaatccatcaaaaccacaataagacaactcaatatgcatgcatgtccattcgtccacgacgaatcaaagct |
1000490 |
T |
|
| Q |
219 |
tgatcaagtttccttaactcaatgttagatctaacaatttccttaactcaatgtcataaatatcatacttcnnnnnnnttagaaatggcagtaactagtg |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1000491 |
tgatcaagtttccttaactcaatgttagatctaacaatttccttaactcaatgtcataaatatcatacttcaaaaaaattagaaatggcagtaactagtg |
1000590 |
T |
|
| Q |
319 |
atgattttcttgttcctggaggaccatagagcaaatagcctatcttccaaggcttaccaatttttgcataatactctttagccttactgaatgtaacaag |
418 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1000591 |
atgattttcctgttcctggaggaccatagaacaaatagcctatcttccaaggcttaccaatttttgcataatactctttagccttactgaatgtaacaag |
1000690 |
T |
|
| Q |
419 |
atcatcaacaatctctttcttcttttaggattcattgcaattgtttcaaagaagatggatgttcaaatatcacatgactccatttacctctcc |
511 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1000691 |
atcatcaacaatctatttcttcttttaggattcattgcaattgtttcaaagaagatggatgttcaaatataacatgactccatttacctctcc |
1000783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 261 - 517
Target Start/End: Complemental strand, 6968439 - 6968182
Alignment:
| Q |
261 |
ttaactcaatgtcataaatatcatacttcnnnnnnnttagaaatggcagtaactagtgatgattttcttgttcctggaggaccatagagcaaatagccta |
360 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||| |||| ||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
6968439 |
ttaactcaatgtcataaatatcatacttcaaaaaa-ttagcaatagcagcaactagtgatgattttcctgttcctggaggaccataaagcaaatagcctc |
6968341 |
T |
|
| Q |
361 |
tcttccaaggcttaccaatttttgcataatactctttagccttactgaatgtaacaagatcatcaacaatctctttcttc-ttttaggattcattgcaat |
459 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
6968340 |
tcttccaaggcttgccaatttttgcataatactctttagccttactgaatgtaacaagatcatcaacaatctctttcttctttttaggactcattgcaat |
6968241 |
T |
|
| Q |
460 |
tgtttcaaa-gaagatggatgttcaaatatcacatgactccatttacctctcctttcat |
517 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
6968240 |
tgtttcaaacgaagacggatgttcaaatatcacatgactccacttacctcccctttcat |
6968182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 6968966 - 6968762
Alignment:
| Q |
22 |
agctaccttaggcatcaagttttcagcaacatcagcctgagttatgtcggtctcttccaacaagcatcgaaccgtcttgaacaaaggatgagattcaata |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||| | ||| ||||| |||||||||||||||||||||| |
|
|
| T |
6968966 |
agctaccttaggcatcaagttttcagcaacatcagccggagtcatgttagtctcttccaacaagcgttgaatcgtctcgaacaaaggatgagattcaata |
6968867 |
T |
|
| Q |
122 |
ctcagataactcattgctagcattttgaatccatcaaaaccacaataagacaactcaatatgcatgcatgtccattcgtccacgacgaatcaaagcttga |
221 |
Q |
| |
|
||||||||| ||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6968866 |
ctcagataattcattgccaacattttgaatccatcaaaaccacagtaagacaactcaatatg----catgtccattcgtccacgacgaatcaaagcttga |
6968771 |
T |
|
| Q |
222 |
tcaagtttc |
230 |
Q |
| |
|
||||||||| |
|
|
| T |
6968770 |
tcaagtttc |
6968762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 51316108 - 51316269
Alignment:
| Q |
25 |
taccttaggcatcaagttttcagcaacatcagcctgagttatgtcggtctcttccaacaagcatcgaaccgtcttgaacaaaggatgagattcaatactc |
124 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| | || || | ||||||||||||||||||| || ||||| || |||| ||||||||||| |||| |
|
|
| T |
51316108 |
taccttaggcatcaagtttttagcaacatcagctggtgtcatattagtctcttccaacaagcatctaatcgtctcgagcaaaaaatgagattcaagactc |
51316207 |
T |
|
| Q |
125 |
agataactcattgctagcattttgaatccatcaaaaccacaataagacaactcaatatgcat |
186 |
Q |
| |
|
|||||| ||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
51316208 |
agataattcattgccaacattttgaatccatcaaaaccacaataagacaattcaatatgcat |
51316269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 24 - 230
Target Start/End: Complemental strand, 2178255 - 2178053
Alignment:
| Q |
24 |
ctaccttaggcatcaagttttcagcaacatcagcctgagttatgtcggtctcttccaacaagcatcgaaccgtcttgaacaaaggatgagattcaatact |
123 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| | || || | |||||| ||||||||||| || | | | ||||||| ||||||||||| ||| |
|
|
| T |
2178255 |
ctacctttggcatcaaattttcagcaacatcagctggtgtcatattagtctctaccaacaagcatgcaatcttgtcgaacaaaaaatgagattcaagact |
2178156 |
T |
|
| Q |
124 |
cagataactcattgctagcattttgaatccatcaaaaccacaataagacaactcaatatgcatgcatgtccattcgtccacgacgaatcaaagcttgatc |
223 |
Q |
| |
|
|||||| || |||| | |||||||||||||||||||| |||||||| ||| || || | |||||||||||| ||| |||| ||| ||||| ||||| |
|
|
| T |
2178155 |
cagatacttcgttgccaacattttgaatccatcaaaacaacaataaggcaattcgat----aagcatgtccattcttcctcgacaaattaaagcatgatc |
2178060 |
T |
|
| Q |
224 |
aagtttc |
230 |
Q |
| |
|
||||||| |
|
|
| T |
2178059 |
aagtttc |
2178053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University