View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20593_low_6 (Length: 522)
Name: NF20593_low_6
Description: NF20593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20593_low_6 |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: scaffold0328 (Bit Score: 160; Significance: 5e-85; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 291 - 510
Target Start/End: Original strand, 2764 - 2983
Alignment:
| Q |
291 |
tttatttctctctgggttgttatcatgtgagagtttatttctctctaggtatgttatgatttgtgagagtttatttctttctgtgaagttttatttatgt |
390 |
Q |
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| T |
2764 |
tttatttctctctggattgttatcatgtgagagtttatttctctctagacatgttatgattagtgagagtttatttctttatatggagttttatttatgg |
2863 |
T |
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| Q |
391 |
gagtttatttctctctgggtatgatatttttgtggagtttatttctccctgtgtgtttgaagcttttatgtgaggttgggtatttccaaattctgttgta |
490 |
Q |
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| T |
2864 |
gattttatttctccctgggtatgatatttttgtagagtttatttctccttgtgtgtttgaagcttttatgtgaggctgggtatttccaaattctattgta |
2963 |
T |
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| Q |
491 |
gtatgcctctgatgtttttg |
510 |
Q |
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| T |
2964 |
gtatgcctctggtgtttttg |
2983 |
T |
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Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 392 - 517
Target Start/End: Original strand, 20072979 - 20073103
Alignment:
| Q |
392 |
agtttatttctctctgggtatgatatttttgtggagtttatttctccctgtgtgtttgaagcttttatgtgaggttgggtatttccaaattctgttgtag |
491 |
Q |
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| T |
20072979 |
agtttatttctcattgagtatgttatttttgtggagtttatttctccctatgtgtttgaag-ttttctttgaggctggatatttccaatttccgctgtag |
20073077 |
T |
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| Q |
492 |
tatgcctctgatgtttttgatgatgt |
517 |
Q |
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| T |
20073078 |
taagcctctgatgtttttggtgatgt |
20073103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 349 - 407
Target Start/End: Original strand, 6628212 - 6628271
Alignment:
| Q |
349 |
atttgtgagagtttatttctttctg-tgaagttttatttatgtgagtttatttctctctg |
407 |
Q |
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| T |
6628212 |
atttttgagagtttatttctttctgatgaagttttacttgtgagagtttatttctctctg |
6628271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 19705890 - 19705939
Alignment:
| Q |
285 |
tgggagtttatttctctctgggttgttatcatgtgagagtttatttctctct |
336 |
Q |
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| T |
19705890 |
tgggagtttatttctccctgggttgctgt--tgtgagagtttatttctctct |
19705939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 19004970 - 19005019
Alignment:
| Q |
285 |
tgggagtttatttctctctgggttgttatcatgtgagagtttatttctctct |
336 |
Q |
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| T |
19004970 |
tgggagtttatttctccctggattgatat--tgtgagagtttatttctctct |
19005019 |
T |
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