View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20594_high_10 (Length: 520)
Name: NF20594_high_10
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 36639463 - 36639968
Alignment:
| Q |
1 |
tggaatatacaaaagtgaaatcatgtaagcagattatgcgacagagagaatcagatatggccacatccccaaaaaagttgtagagactcagaaaggaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36639463 |
tggaatatacaaaagtgaaatcatgtaagcagattatgcgacagagagaatcagatatggccacatccccaaaaaagttgtatagactcagaaaggaaac |
36639562 |
T |
|
| Q |
101 |
atgacgtatatattgatgctcctcctatctttatttgacattccaaatcaaatcataa---taatataaaatcatatcatatcctttctactttttatag |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36639563 |
atgacgtatatattgatgctcctcctatctttatttgacattccaaatcaaatcataataataatataaaatcatatcatatcctttctactttttatag |
36639662 |
T |
|
| Q |
198 |
ttctttattaacttttgatatcatattttttaagatagattttgcatatggcagcacctgcaaccaggtgattttcgacaacaaaatatataagacggct |
297 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
36639663 |
ttctttattaacttttgatatcatattttttaagatagattttgcatatggcagcacctgcaaccaggtaattttcgacaaccaaatatataagacggct |
36639762 |
T |
|
| Q |
298 |
ctgtcacatagatacacagaggtagcagtgataacgtacagataatgcttcctcattagtgtctttaatcattaatttcttcccaaatggctgcatcacc |
397 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36639763 |
ctgtcacatagatacacagaggtagcagtgaaaacgtacagataatgcttcctcattagtgtctttaatcattaatttcttcccaaatggctgcaacacc |
36639862 |
T |
|
| Q |
398 |
catcattctaatttctaatttttaattattaaatccttaaattatcccaccattataaatatatgtgtcttcttcttcacaacatgcatattaaattaac |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36639863 |
catcattctaatttctaatttttaattattaaatccttgaattatcccaccattataaatatatgtgtcttcttcttcacaacatgcatattaaattaac |
36639962 |
T |
|
| Q |
498 |
ctagct |
503 |
Q |
| |
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|||||| |
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| T |
36639963 |
ctagct |
36639968 |
T |
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