View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20594_high_11 (Length: 492)
Name: NF20594_high_11
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_high_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 5 - 492
Target Start/End: Complemental strand, 10125202 - 10124715
Alignment:
| Q |
5 |
gagagattctgggatttgagcctaaaatatctttcacggaaatatattttacaaagattttatttagggtatttgatcttggacaacttttaattcaaag |
104 |
Q |
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| T |
10125202 |
gagaggttctgggatttgagcctaaaatatctttcacggaaatatattttacaaaagatttatttaggttatttgatcttggacaacttttaattcaaag |
10125103 |
T |
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| Q |
105 |
gcatttgatttaatcatatgannnnnnnnnnnnggatatggtttagttatatggtagcctaaaaaatttgcaacaagttaggagtttttgttaccagtct |
204 |
Q |
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| T |
10125102 |
gcatttgatttaatcatatgatttttactttttggatatggtttagttatatggtagcctaaaaaatttgcaacaagttaggagtttttgttaccagtct |
10125003 |
T |
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| Q |
205 |
tgctcatatttatccaatgtcataccctagtcttactcattcccttgaatttatgcattctttcacgtaacaaaccttttgattctacgttttctctctg |
304 |
Q |
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| T |
10125002 |
tgctcatatctatccaatgtcagaccctagtcttactcattcccttgaatttatgcattatttcacgtaacaaaccttttgattctacgttttctctctg |
10124903 |
T |
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| Q |
305 |
atttctttcacaaatcacaacccattagagaacaatgaatgactctgaacaacccacacaaagtcttcctcttccgatgttaaccccgtttcaaagaatg |
404 |
Q |
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| T |
10124902 |
atttctttcaaaaatcacaacccattagagaacaatgaatgactctgaacaacccacacaaagtcttcctcttccgatgttaaccccgtttcaaagaatg |
10124803 |
T |
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| Q |
405 |
tttgcccacccaaatattccaccacttccacaacaaccattgccactaaccttgaatattcctcaaccatcacatcctccaccaccac |
492 |
Q |
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| T |
10124802 |
tttgcccacccaaatattccaccacttcaacaacaaccattgccgttaaccttgaatattcctcaaccatcacatcctcctccaccac |
10124715 |
T |
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Back To:
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Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 319 - 429
Target Start/End: Complemental strand, 25043356 - 25043246
Alignment:
| Q |
319 |
tcacaacccattagagaacaatgaatgactctgaacaacccacacaaagtcttcctcttccgatgttaaccccgtttcaaagaatgtttgcccacccaaa |
418 |
Q |
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|||||| |||| |||||| |||||| |||||||||||||| | |||||||||||||||||||||| |||| | ||||||| || ||| |||||||||| |
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| T |
25043356 |
tcacaatccataagagaaaaatgaacgactctgaacaaccgatacaaagtcttcctcttccgatgctaacgctgtttcaattcatattttcccacccaaa |
25043257 |
T |
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| Q |
419 |
tattccaccac |
429 |
Q |
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| T |
25043256 |
aattccaccac |
25043246 |
T |
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