View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20594_high_18 (Length: 431)
Name: NF20594_high_18
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 12 - 418
Target Start/End: Complemental strand, 54819438 - 54819030
Alignment:
| Q |
12 |
atgaacaatattatgtaatcaggctgaagaagtgttaatttcaagtcataaataatatggatcaatttagtttggatatatttgtaaattgtaatgcgtg |
111 |
Q |
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| T |
54819438 |
atgaacaatattatgtaatcaggctgaagaagtgttaatttcaagtcataaataatatggatcaatttagttgggatatatttgtaaattgtaatgcgtg |
54819339 |
T |
|
| Q |
112 |
tattggtttgttctgtaaacaaactatacataagttggtatttgatactcaaattgtgtaaggagttgttaacttattgttggtgagaatcaatgtttga |
211 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54819338 |
tattggtttgttctgtaaacaaactatagataagttggtatttgatactcaaattgtgtaaggagttgttaacttattgttggtgagaatcaatgtttga |
54819239 |
T |
|
| Q |
212 |
tattctactccaaagattagttgtttacttttcctttttcgttgttgaatatctcttttgctgagcagtggggatcccatgatttatactttatctacgt |
311 |
Q |
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| T |
54819238 |
tattctactccaaagattagttgtttacttttcctttttcgttgttgaatatctcttttgctgagcagtggggatcccatgatttatcctttatctacgt |
54819139 |
T |
|
| Q |
312 |
actagtactacatcactctacacatggttgatgtggaaaaggtatgggtagggagcattcattcatat--ttgttgtggagtgtgattgagttagattac |
409 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
54819138 |
actagtactacatcactctacacatggttgatgtgggaaaggtatgggtagggagcattcgttcatatcattgttgtggagtgtgattgagttagattac |
54819039 |
T |
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| Q |
410 |
caaccctat |
418 |
Q |
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|||| |||| |
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| T |
54819038 |
caactctat |
54819030 |
T |
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