View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20594_high_20 (Length: 392)
Name: NF20594_high_20
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 10295470 - 10295077
Alignment:
| Q |
1 |
aaaaaagtttattctataattcatgtcactttgaattcttctcttaacttttggaatatggttcttccatttgtcaggggaacaaaaacatatgcaggca |
100 |
Q |
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| T |
10295470 |
aaaaaagtttattctataattcatgtcactttgaattcttctcttaacttttggaataaggttcttccatttgtcaggggaacaaaaacatatgcaggca |
10295371 |
T |
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| Q |
101 |
taaactgatcatgggtcaaataaatttga-tttatta-tttttctattgcaaataaatttgattctaaatgcaacgtgtgaggtttataagaaagtatat |
198 |
Q |
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| T |
10295370 |
taaactgatcataggtcaaataaatctgattttattattttttttattacaaataaatttgattctaaatgcaacgtgtgaggtttctaagaaagtatat |
10295271 |
T |
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| Q |
199 |
tgcacacaattctattggataagttctttgctcctataataaaaaagtggaagtgaatgagatcccataatgatgaaaagtaagaagaatgacgcatctt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10295270 |
tgcacacaattctattggataagttctttgctcctataat-aaaaagtggaagtgaatgagatcccataatgatgaaaagtaagaagaatgacacatctt |
10295172 |
T |
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| Q |
299 |
tttaagtaactatgagtatatattg----aattaagacattaagtttatactatagttttgagttgtttcttattccattcatcacaaggtccct |
389 |
Q |
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|||||||| |||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10295171 |
tttaagtacttatgtgtatatattgaattaattaagacattaagtttatagtatagttttgagttgtttcttattccattcctcacaaggtccct |
10295077 |
T |
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