View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20594_high_3 (Length: 642)

Name: NF20594_high_3
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20594_high_3
NF20594_high_3
[»] chr2 (1 HSPs)
chr2 (9-624)||(35425689-35426317)


Alignment Details
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 9 - 624
Target Start/End: Original strand, 35425689 - 35426317
Alignment:
Q  9 gaagaatatgagagaaaagtaagatgttgatttaaatgatcaattttgtttggcttgttgtgcatgacctcttgagattcagcatcacatagttagtgat 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35425689 gaagaaaatgagagaaaagtaagatgttgatttaaatgatcaattttgtttggcttgttgtgcatgacctcttgagattcagcatcacatagttagtgat 35425788  T
Q  109 ccttcttgccctaggtgtgtggaacatc-----------acaccttgcaagattgtccaaaagcaaatgtgaatccgaaagcttttcaattttttgaata 197  Q
    ||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35425789 ccttcttgccctaggtgtgtggaacatccatggaacttcacaccttgcaagattgtccaaaagcaaatgtgaatccgaaagcttttgaattttttgaata 35425888  T
Q  198 ctcaagtatttgatcatgttagttataacttgataaaaattttggtgccttcctattctgtgatgaaattagaaacgtttttactcctctcannnnnnnn 297  Q
     ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |            
T  35425889 ttcaagtatttgatcatgttagttataacttgattaaaattttggtgccttcctattctgtgatgaaattagaaacgtttttactcctctaatttttttt 35425988  T
Q  298 n--ggacagataatcctctaattttcatcgctaaattacaatatatactaagttgcgaccaaataatccttttgtgttaccattttaaccttttgtatat 395  Q
       |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  35425989 tttggacagataatcctctaatttttatcgctaaattacaatatatactaagttgcgaccaaataatccttttgtgttaccattttaaccttttgtatag 35426088  T
Q  396 atagatgattttgaaaggaaaaatattgaggactagcatgacaacaccttaatcattgagaaattaaattggaacgaccaaaaaatttctctaggaggtg 495  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35426089 atagatgaatttgaaaggaaaagtattgaggactagcatgacaacacgttaatcattgagaaattaaattggaacgaccgaaaaatttctctaggaggtg 35426188  T
Q  496 aatcgaaggatnnnnnnnntaagtttctttttccatactccacatttctaaaaacagcacatcatctagtatgcagaactgaaaattttgggagcagtat 595  Q
    |||||||||||        ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35426189 aatcgaaggataaaaaaaataagtttctttttccatactccatatttctaaaaacagcacatcatctagtatgcagaactgaaaattttgggagcagtat 35426288  T
Q  596 ccgtgtctcacaaaagggcctatacaagg 624  Q
    |||||| ||||||||||||||||||||||    
T  35426289 ccgtgtgtcacaaaagggcctatacaagg 35426317  T

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