View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20594_high_35 (Length: 248)
Name: NF20594_high_35
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_high_35 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 2448146 - 2447934
Alignment:
| Q |
12 |
tagcaaagggaagcgcataatcaagagggtcatctccctgaaatacaccattagatgctggctgcatcggcggggggcaaacatttttagatgtgggatt |
111 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||| ||| |
|
|
| T |
2448146 |
tagccaagggaagtgcataatcaagagggtgatctccctgaaatacaccattagacgctggctgcatcggcggcgggcaaacatttccagatgtggtatt |
2448047 |
T |
|
| Q |
112 |
ggaaggcattccgatacctctaattccactattttctgcaaaaaggacacaaaactacacagacatcagtaactgataaaattaagacctcaaaatagga |
211 |
Q |
| |
|
||||| |||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
2448046 |
ggaagtcattccgatacctctaattcaaatattttctgcaaaaaggacac--aactacacagacatcagtaactgataaaattaagacctgaaaatagca |
2447949 |
T |
|
| Q |
212 |
ttgtagcaccgacac |
226 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2447948 |
ttgtagcaccgacac |
2447934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 2459146 - 2459031
Alignment:
| Q |
12 |
tagcaaagggaagcgcataatcaagagggtcatctccctgaaatacaccattagatgctggctgcatcggcggggggcaaacatttttagatgtgggatt |
111 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
2459146 |
tagccaaggtaagtgcataatcaagagggtcatctccctgaaatacaccattagatgctggctgcatcggcggggggaaaacatttttagatgtggtatt |
2459047 |
T |
|
| Q |
112 |
ggaaggcattccgata |
127 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
2459046 |
ggaagtcattccgata |
2459031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 2443058 - 2442973
Alignment:
| Q |
12 |
tagcaaagggaagcgcataatcaagagggtcatctccctgaaatacaccattagatgctggctgcatcggcggggggcaaacattt |
97 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |||||||||||||||||||||||||| | || ||| || || |||||||||||| |
|
|
| T |
2443058 |
tagccaagggaagtgcataatcaagagggtgatctccctgaaatacaccattagatgtggacttcattggtggcgggcaaacattt |
2442973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 2458993 - 2458925
Alignment:
| Q |
141 |
tattttctgcaaaaaggacacaaaactacacagacatcagtaactgataaaattaagacctcaaaatag |
209 |
Q |
| |
|
||||||||||| |||||||||| | |||| |||| |||| || ||||||||||||||||| ||||||| |
|
|
| T |
2458993 |
tattttctgcaggaaggacacaagattacaaagacgtcagaaaatgataaaattaagacctgaaaatag |
2458925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 35053686 - 35053718
Alignment:
| Q |
213 |
tgtagcaccgacacttctgatggaaggtgtgtc |
245 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
35053686 |
tgtagcaccgacacttctgattgaaggtgtgtc |
35053718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 35070003 - 35070035
Alignment:
| Q |
213 |
tgtagcaccgacacttctgatggaaggtgtgtc |
245 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
35070003 |
tgtagcaccgacacttctgattgaaggtgtgtc |
35070035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 248
Target Start/End: Original strand, 5409083 - 5409118
Alignment:
| Q |
213 |
tgtagcaccgacacttctgatggaaggtgtgtccgg |
248 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5409083 |
tgtagcaccgaaacttctgatggaaggtgtgtccgg |
5409118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 31020637 - 31020667
Alignment:
| Q |
218 |
caccgacacttctgatggaaggtgtgtccgg |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
31020637 |
caccgacacttctgatggaaggtgtgtccgg |
31020667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 23638727 - 23638699
Alignment:
| Q |
220 |
ccgacacttctgatggaaggtgtgtccgg |
248 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
23638727 |
ccgacacttctgatggaaggtgtgtccgg |
23638699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 244
Target Start/End: Complemental strand, 23253368 - 23253337
Alignment:
| Q |
213 |
tgtagcaccgacacttctgatggaaggtgtgt |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23253368 |
tgtagcaccgacacttctgatggaaggtgtgt |
23253337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 247
Target Start/End: Complemental strand, 5243333 - 5243299
Alignment:
| Q |
213 |
tgtagcaccgacacttctgatggaaggtgtgtccg |
247 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5243333 |
tgtagcaccgacacttctgattgaaggtgtgtccg |
5243299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 11203109 - 11203077
Alignment:
| Q |
216 |
agcaccgacacttctgatggaaggtgtgtccgg |
248 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
11203109 |
agcaccgacacttctgatcgaaggtgtgtccgg |
11203077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University