View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20594_high_41 (Length: 232)
Name: NF20594_high_41
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_high_41 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 53116980 - 53116775
Alignment:
| Q |
12 |
agcagagaggtaaaattactattccataaacagcttctgtttggttttaattgtttgcttaaagtggaaaaaatatacattaaaagtggacagtgaatcg |
111 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
53116980 |
agcagataggtaaaattactattccataaacagcttctgtttggttttaattgtttgcttaaagtggaaaaaatatatattaaaagtggacagtgaatca |
53116881 |
T |
|
| Q |
112 |
attaatgaataaaaaatatatgaactaaactaaggaagaacgcattcttaattatacaatacgagaatgcaattatagccaaaaatctagtttttaacga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53116880 |
attaatgaataaaaaatatatgaactaaactaaggaagaacgcattcttaattatacaatacgagaatgcaattatagccaaaaatctagtttttaacga |
53116781 |
T |
|
| Q |
212 |
gtatgt |
217 |
Q |
| |
|
|||||| |
|
|
| T |
53116780 |
gtatgt |
53116775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 53103609 - 53103553
Alignment:
| Q |
136 |
ctaaactaaggaagaacgcattcttaattatacaatacgagaatgcaattatagcca |
192 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||| || |||||||||||||||| |
|
|
| T |
53103609 |
ctaaactaaggaagaacacgttcttaattatacaataggataatgcaattatagcca |
53103553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University