View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20594_high_43 (Length: 219)
Name: NF20594_high_43
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_high_43 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 21216135 - 21216343
Alignment:
| Q |
1 |
actttcaaccccaacatatttgcaaaatttgtcaaaatctcttccaccataatagccaaagatctcgtagccttagtaaacaaaagaacatcattcacaa |
100 |
Q |
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| T |
21216135 |
actttcaaccccaacatatttgcaaaatttgtcaaaatctcttccaccataatagccaaagatctcgtagccttagtaaacaaaagaacatcattcataa |
21216234 |
T |
|
| Q |
101 |
aaaataaataggatagagtcaatccattgcaagatatgttcaccgacttccaatgattcaacttcactgccttcaaactatcatgggacaaaaactcctt |
200 |
Q |
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||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21216235 |
aaaataaatgggatagagtcagcccattgcgagatatgttcaccgacttccaatgattcaacttcactgccttcaaaatatcatgggacaaaaactcctt |
21216334 |
T |
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| Q |
201 |
ataaattac |
209 |
Q |
| |
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||||||||| |
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| T |
21216335 |
ataaattac |
21216343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 22912885 - 22912941
Alignment:
| Q |
1 |
actttcaaccccaacatatttgcaaaatttgtcaaaatctcttccaccataatagcc |
57 |
Q |
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| T |
22912885 |
actttcaaccccgacatatttgcaaaatttgtcaaaatcccttccaccataatagcc |
22912941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 15404028 - 15404180
Alignment:
| Q |
11 |
ccaacatatttgcaaaatttgtcaaaatctcttccaccataatagccaaagatctcgtagccttagtaaacaaaagaacatcattcacaaaaaataaata |
110 |
Q |
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| T |
15404028 |
ccaacatatttgcaaaatttgtcaaaatcccttccaccataatagcctgagatctcgtagccttaataaacaaaagaacatcatccgcaaaaaataaatg |
15404127 |
T |
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| Q |
111 |
ggatagagtcaatccattgcaagatatgttcaccgacttccaatgattcaact |
163 |
Q |
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| T |
15404128 |
ggatagaatcggcccattgtgagatatgctcaccgacttccaatgattcaact |
15404180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 7407057 - 7406872
Alignment:
| Q |
13 |
aacatatttgcaaaatttgtcaaaatctcttccaccataatagccaaagatctcgtagccttagtaaacaaaagaacatcattcacaaaaaataaatagg |
112 |
Q |
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|
|||||||||||||||||| ||||||| ||| |||||| | | | ||||||| |||||||||||||||||||||||| || |||| ||||||| | || |
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| T |
7407057 |
aacatatttgcaaaatttatcaaaataccttacaccatgagaacttgagatctcctagccttagtaaacaaaagaacattatccacataaaataagtggg |
7406958 |
T |
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| Q |
113 |
atagagtcaatccattgcaagatatgttcaccgacttccaatgattcaacttcactgccttcaaactatcatgggacaaaaactcc |
198 |
Q |
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| T |
7406957 |
atagagtcgtcccattgcaagatatgttcattgccttctaacgattcaactccactgccttcaaaatatcatgggacaaaaactcc |
7406872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 10625203 - 10625119
Alignment:
| Q |
1 |
actttcaaccccaacatatttgcaaaatttgtcaaaatctcttccaccataatagccaaagatctcgtagccttagtaaacaaaa |
85 |
Q |
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|||||||||||||| | ||||| ||||||||||||||| ||||| |||||| ||| | ||||||||||||||||||||||||||| |
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| T |
10625203 |
actttcaaccccaatacatttgtaaaatttgtcaaaatttcttctaccatagtagtctaagatctcgtagccttagtaaacaaaa |
10625119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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