View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20594_high_7 (Length: 587)
Name: NF20594_high_7
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 484; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 14 - 573
Target Start/End: Complemental strand, 33219389 - 33218834
Alignment:
| Q |
14 |
atatatagcaacataacatctcaggttataatgtatgacaatgcaactagtgatcatcctataattcagatgcatttgattccaatctctatctctaaca |
113 |
Q |
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| T |
33219389 |
atatatagcaacataacatctcaggttataatgcatgacaatgcaactagtgatcatcctataattcagatgcatttgattccaatctctatctctaaca |
33219290 |
T |
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| Q |
114 |
ttaattt-caaacagatagaaagcaaaatttgctaatgaaaaacataatttacatagctttagccttattaacaaacctaagaaaccttaattgtcaaca |
212 |
Q |
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| T |
33219289 |
ttaattttcaaacagagagaaagcaaaatttgctaatgaaaaacataatttacatagctttagccttattaacaaacctaagaaaccttaattgtcaaca |
33219190 |
T |
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| Q |
213 |
acaagcatatcttgagttcttgacaatattttaggacactgtgattccatatgtaggattatacataagcaaaacaaagaagaggattccaagattgcta |
312 |
Q |
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| T |
33219189 |
acaagcatatcttgagttcttgacaatattttaggacactatgattccatatgtaggattatacataagcaaaacaaagaagaggattccaagattgcta |
33219090 |
T |
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| Q |
313 |
gttgcgacttttgcacttttccatggctcttggtgctgcataaatcaaatggataatcatataccaatatgaattctttattttgatttaatatttgtga |
412 |
Q |
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| T |
33219089 |
gttgcgacttttgcacttttccatggctcttggtgctgcataaatcaaatggataatcatataccaatatgaattctttattttgataaaatatttgtga |
33218990 |
T |
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| Q |
413 |
nnnnnnncaatgtttatatccacttttgacatctaaggtttattccaatatgtacttgccatatggttttaaaaatatctatatcatattacattaatga |
512 |
Q |
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| T |
33218989 |
tttttttcaatgtttatatccacttttgacctctatggtttattccaatatgtacttgccatatggttttaaaaatatctatatcat-----attaatga |
33218895 |
T |
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| Q |
513 |
tcctttaagagatatatgagacaaagattatcatatatgtgagtctcacctaatccaattg |
573 |
Q |
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| T |
33218894 |
tcctttaagagatatatgagacaaagattatcatatatgtgagtctcacctaatccaattg |
33218834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 307 - 391
Target Start/End: Complemental strand, 6169545 - 6169461
Alignment:
| Q |
307 |
ttgctagttgcgacttttgcacttttccatggctcttggtgctgcataaatcaaatggataatcatataccaatatgaattcttt |
391 |
Q |
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| T |
6169545 |
ttgctagttgcgtcttttgtacttttccatggcgcttggtgctacataaattagatggatattcatattccaatatgaattcttt |
6169461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 6169629 - 6169577
Alignment:
| Q |
244 |
taggacactgtgattccatatgtaggattatacataagcaaaacaaagaagag |
296 |
Q |
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| T |
6169629 |
taggacactatgattccatatgtaagattatacataagcaaagcaaggaagag |
6169577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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