View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20594_high_8 (Length: 564)
Name: NF20594_high_8
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 21 - 363
Target Start/End: Original strand, 2785302 - 2785644
Alignment:
| Q |
21 |
tggtgcaagactatttcacatgtgcgcattggagtattgggcaaagacatgaatctaaattgnnnnnnnnnnnnnnnnnnnnnnnnctaataagaaatgt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2785302 |
tggtgcaagactatttcacatgtgcgcattggagtattgggcaaagacatgaatctaaattgaaaacaaaaacaaaatgtaaaaaactaataagaaatgt |
2785401 |
T |
|
| Q |
121 |
gtacgaataataaagagatgaaggaaacatgacaaaagagtggatttacttttatcaacgnnnnnnnggtgtggaattacaaaagataaagaggatttga |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2785402 |
gtacgaataataaagagatgaaggaaacatgacaaaagagtggatttacttttatcaaccaaaaaaaggtgtggaattacaaaagataaagaggatttga |
2785501 |
T |
|
| Q |
221 |
tatgaaaacaattaaccataaacgcctgagccattaaatcaacgtcctcacgttgagaaaagataatgtttagggtgtgcttgttttaaagttactacaa |
320 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2785502 |
tatgaaaacaattaaccataaacacctgagacattaaatcaacgtcctcacgttgagaaaagataatgtttagggtgtgcttgttttaaagttactacaa |
2785601 |
T |
|
| Q |
321 |
tcatttctgggaaagtgagcttagttattttcttatgttcaat |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2785602 |
tcatttctgggaaagtgagcttagttattttcttatgttcaat |
2785644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 406 - 516
Target Start/End: Original strand, 2785688 - 2785797
Alignment:
| Q |
406 |
ttgttctttcaagtgtggaagagcaataataagaaagtatcattcaagaggccaaaaactaagctcaagaaactttaagacaaaaccaatggaaatttaa |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2785688 |
ttgttctttcaagtgtggaagagcaataataagaaagtatcattcaagaggccaaaaa-tgagctcaagaaactttaagacaaaaccaatggaaatttaa |
2785786 |
T |
|
| Q |
506 |
agacaagcaag |
516 |
Q |
| |
|
|||||| |||| |
|
|
| T |
2785787 |
agacaaacaag |
2785797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 410 - 508
Target Start/End: Complemental strand, 27741276 - 27741179
Alignment:
| Q |
410 |
tctttcaagtgtggaagagcaataataagaaagtatcattcaagaggccaaaaactaagctcaagaaactttaagacaaaaccaatggaaatttaaaga |
508 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| |||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
27741276 |
tcttacaagtgtggaagagcaacaataagaaaatatcattcaagaggccaagaa-taagctcaagaaactctaagacaaaaccaatggaaatttgaaga |
27741179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 516
Target Start/End: Original strand, 19288814 - 19288856
Alignment:
| Q |
474 |
gaaactttaagacaaaaccaatggaaatttaaagacaagcaag |
516 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19288814 |
gaaactctaagacaaaaccaatagaaatttaaagacaagcaag |
19288856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University