View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20594_low_14 (Length: 466)
Name: NF20594_low_14
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 449
Target Start/End: Original strand, 46619400 - 46619840
Alignment:
| Q |
9 |
attattctcaactcaaatcagggttgcattgtcacttaatgacttggaattattggagctatagtgatggatgggattgatgattgtacactactttttt |
108 |
Q |
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| T |
46619400 |
attattctcaactcaaatcagggttgcattgtcacttaatgacttggaattattggagctatagtgatggatgggattgatgattgtacactactttttt |
46619499 |
T |
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| Q |
109 |
aggattatattatgtgatggattgaattgtttgtggtttatttggaagatagacatgacaaaaaagttttaccagtaaataaaatactctttccagagat |
208 |
Q |
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| T |
46619500 |
aggattatattatgtgatggattgaattgtttgtggtttatttggaagatagacatgacaaaaaagttttaccagtaaataaaatactctttccagagat |
46619599 |
T |
|
| Q |
209 |
agcgaaaactgagaagctttaatggacagactgggtgtacgattcaacaactacagcttgcc--nnnnnnnnnnttgaacaacgacaatcttgtacaatg |
306 |
Q |
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| T |
46619600 |
agcgaaaactgagaagctttaatggacagactgggtgtacgattcaacaactacagcttgccaaaaaaataatattgaacaacgacaatcttgtacaatg |
46619699 |
T |
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| Q |
307 |
aatgaggtgggtaggaagtgaatttaaaatgtaatagtttgctcaaagttcaattaacacttacnnnnnnnnnatagaaaccaatttaggttggttcgat |
406 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
46619700 |
aatgaggtgggtaggaagtgaatgtaaaatgaaatagtttgctcaaagttcaattaacactt--cttttttttatagaaaccaatttaggttggttcgat |
46619797 |
T |
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| Q |
407 |
agtgttgacttgagacctaaaagtgtgttccttcttaaagttt |
449 |
Q |
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| T |
46619798 |
agtgttgacttgagacctaaaagtgtgttccttcttaaagttt |
46619840 |
T |
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