View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20594_low_15 (Length: 455)
Name: NF20594_low_15
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Original strand, 7260113 - 7260539
Alignment:
| Q |
16 |
ttaattgcacctggaaacataacaaacattatcaacgccgccgttacacctgcatttgttgctcaatttccagctgttaatggtcttggtctctctgcag |
115 |
Q |
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| T |
7260113 |
ttaattgcacctggaaacataacaaacattatcaacgccgccgttacacctgcatttgttgctcaatttccagctgttaatggtcttggtctctctgcag |
7260212 |
T |
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| Q |
116 |
caaggttagaccttggtcctgctggtgttatcccacttcacactcaccctggtgccagtgaacttcttgttgtgacacaaggtcacatcactgctggatt |
215 |
Q |
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| T |
7260213 |
caaggttagaccttggtcctgctggtgttatcccacttcacactcaccctggtgccagtgaacttcttgttgtgacacaaggtcacatcactgctggatt |
7260312 |
T |
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| Q |
216 |
tgtttcatcagctaacactgtttatatcaagacattgaagaaaggtgagcttatggtttttccacaaggtttgttgcattttcaagccactgctggtaag |
315 |
Q |
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| T |
7260313 |
tgtttcatcagctaacactgtttatatcaagacattgaagaaaggtgagcttatggtttttccacaaggtttgttgcattttcaagctactgctggtaag |
7260412 |
T |
|
| Q |
316 |
agaaatgctgttgcttttgctgtttttagtagtgctagtcctggacttcagattcttgattttgcactttttgcaagtaacttctctactcctttgatca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7260413 |
agaaatgctgttgcttttgctgtttttagtagtgctagtcctggacttcagattcttgattttgcactttttgcaagtaacttctctactcctttgatca |
7260512 |
T |
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| Q |
416 |
ctaagaccactttccttgatcctgttc |
442 |
Q |
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| T |
7260513 |
ctaagaccactttccttgatcctgttc |
7260539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 7265988 - 7266052
Alignment:
| Q |
64 |
cctgcatttgttgctcaatttccagctgttaatggtcttggtctctctgcagcaaggttagacct |
128 |
Q |
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| T |
7265988 |
cctgcatttgttaatcaatttccagctgttaatggtcttggtttatcagcagcaaaattagacct |
7266052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 7271025 - 7271066
Alignment:
| Q |
259 |
ggtgagcttatggtttttccacaaggtttgttgcattttcaa |
300 |
Q |
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| T |
7271025 |
ggtgatcttatggtttttccacaagggatgttgcattttcaa |
7271066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 359
Target Start/End: Original strand, 7287283 - 7287383
Alignment:
| Q |
259 |
ggtgagcttatggtttttccacaaggtttgttgcattttcaagccactgctggtaagagaaatgctgttgcttttgctgtttttagtagtgctagtcctg |
358 |
Q |
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||||| |||||||||||||| ||||| ||||||||||||||| | | |||||||| |||| ||| ||||||| | |||||||||||| | ||||| |
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| T |
7287283 |
ggtgatcttatggtttttccccaagggatgttgcattttcaagttaattctggtaagggaaaagctactgcttttcttacttttagtagtgcaaatcctg |
7287382 |
T |
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| Q |
359 |
g |
359 |
Q |
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| T |
7287383 |
g |
7287383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 207 - 296
Target Start/End: Original strand, 18245901 - 18245990
Alignment:
| Q |
207 |
tgctggatttgtttcatcagctaacactgtttatatcaagacattgaagaaaggtgagcttatggtttttccacaaggtttgttgcattt |
296 |
Q |
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|||||| |||||||| || || ||||||||||| || || ||| | | |||||||| ||||||||||||||||||| ||||||||||| |
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| T |
18245901 |
tgctggttttgtttcctctgccaacactgtttacattaaaacactttacaaaggtgatgttatggtttttccacaaggattgttgcattt |
18245990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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