View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20594_low_16 (Length: 443)
Name: NF20594_low_16
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 22 - 434
Target Start/End: Complemental strand, 16828706 - 16828294
Alignment:
| Q |
22 |
gtaagtggacttcctgaaggtaccttattcctgtaagtagttgaaccagccaagaacactggaatagacacaaatatagtaatagtagaaattgcaaaac |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
16828706 |
gtaagtggacttcctgaaggtaccttattcctgtaagttgttgaaccagccaagaacactggaatagacacaaatatagtgatagtagatattgcaaaac |
16828607 |
T |
|
| Q |
122 |
cccattcccaacctttattatcttcaacccaaacaacaaaagtaactgcaataagggcaccacatgatagacaaaaaacaaagtagttgaagaaagttga |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16828606 |
cccattcccaacctttattatcttcaacccaaacaacaaaagtaactgcaataagggcaccacatgatagacaaaaaacaaagtagttgaagaaagttga |
16828507 |
T |
|
| Q |
222 |
tctttgcttccttccatttggtgtagtttcatcaaattgttcaccaccatgaactggtaaagatccttttattcctccaactccaagtgctactagatat |
321 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16828506 |
tctttgcttccttccatttggtgtagcttcatcaaattgttcaccaccatgaactggtaaagatccttttattcctccaactccaagtgctactagatat |
16828407 |
T |
|
| Q |
322 |
agaccagcaaataacattgctgcttttccaccattaacttcttcacatggagtggattcattacattttgttggttttagtgaaggtacatgagcttgta |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16828406 |
agaccagcaaataacattgctgcttttccaccattaacttcttcacatggagtggattcattacattttgttggttttagtgaaggtacatgagcttgta |
16828307 |
T |
|
| Q |
422 |
ttgttagtataat |
434 |
Q |
| |
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||||||||||||| |
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| T |
16828306 |
ttgttagtataat |
16828294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 22 - 362
Target Start/End: Original strand, 25171681 - 25172021
Alignment:
| Q |
22 |
gtaagtggacttcctgaaggtaccttattcctgtaagtagttgaaccagccaagaacactggaatagacacaaatatagtaatagtagaaattgcaaaac |
121 |
Q |
| |
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||||| |||||||| | ||| | ||||||||| || |||| ||||||||||||||||| |||||||| |||||||| ||||||||| |||| |||||| |
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| T |
25171681 |
gtaagaggacttccagtaggaatcttattcctatatttagtagaaccagccaagaacacaggaatagaaacaaatatgctaatagtagcaattccaaaac |
25171780 |
T |
|
| Q |
122 |
cccattcccaacctttattatcttcaacccaaacaacaaaagtaactgcaataagggcaccacatgatagacaaaaaacaaagtagttgaagaaagttga |
221 |
Q |
| |
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|||||| ||| || |||||||||||| ||| ||||||||||||||||||||||| |||||||||| || | ||| | |||||||| ||||||||||| |
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| T |
25171781 |
cccatttccacccaatattatcttcaatccacacaacaaaagtaactgcaataagtgcaccacatgctaagctaaagatgaagtagttaaagaaagttga |
25171880 |
T |
|
| Q |
222 |
tctttgcttccttccatttggtgtagtttcatcaaattgttcaccaccatgaactggtaaagatccttttattcctccaactccaagtgctactagatat |
321 |
Q |
| |
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||| | ||| |||||| | | ||||||||||| ||| ||||||| || || ||||| || |||||||||||||||||||| ||||| ||| |
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| T |
25171881 |
tctattctttcttccagatacattgtcctcatcaaattgctcagcaccatgtggtgccaatgatcccttaattcctccaactccaagtgcaactaggtat |
25171980 |
T |
|
| Q |
322 |
agaccagcaaataacattgctgcttttccaccattaacttc |
362 |
Q |
| |
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|| ||| |||||| |||| ||||||| |||||| |||||| |
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|
| T |
25171981 |
agtccaccaaatagcattaatgcttttgcaccatgaacttc |
25172021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 118 - 353
Target Start/End: Complemental strand, 44611527 - 44611292
Alignment:
| Q |
118 |
aaaccccattcccaacctttattatcttcaacccaaacaacaaaagtaactgcaataagggcaccacatgatagacaaaaaacaaagtagttgaagaaag |
217 |
Q |
| |
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|||||||| | ||| ||||| || ||||||| ||| || |||||||||||||||| | ||||||||||| || | || ||||||||||| || || |
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| T |
44611527 |
aaaccccactgccatcctttgttgtcttcaatccacaccacaaaagtaactgcaaacaatgcaccacatgacaggctgaagacaaagtagttaaaaaatt |
44611428 |
T |
|
| Q |
218 |
ttgatctttgcttccttccatttggtgtagtttcatcaaattgttcaccaccatgaactggtaaagatccttttattcctccaactccaagtgctactag |
317 |
Q |
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|| |||| ||| ||||| | ||||||||| ||||||||||||||| | |||||| || | || ||||||||||| || ||||||||||| || || |
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| T |
44611427 |
cagaccttttctttcttccttctggtgtagtctcatcaaattgttcagctccatgaggaggaagtgaaccttttattccccctactccaagtgccacaag |
44611328 |
T |
|
| Q |
318 |
atatagaccagcaaataacattgctgcttttccacc |
353 |
Q |
| |
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||| || || ||||||| ||| |||||||||||||| |
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| T |
44611327 |
atagaggcctgcaaatagcatagctgcttttccacc |
44611292 |
T |
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