View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20594_low_17 (Length: 435)
Name: NF20594_low_17
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 11 - 419
Target Start/End: Original strand, 31120412 - 31120820
Alignment:
| Q |
11 |
cataggtgtatgagtatcattactcttatagctagttaacatgttactaatcatatactgtcgctatcttggaactttagggtggatggagagattcaac |
110 |
Q |
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| T |
31120412 |
cataggtgtatgagtatcattactcttatagctagttgacatgttactaatcatatactgtcactgtcttggaactttagggtggatggagagattcaac |
31120511 |
T |
|
| Q |
111 |
aaggcacgacatgggatccaatacttatggagcaccaggttcgttaaacatatactagtttgacatggagagtacaaaatatatatgccatcttgagtta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31120512 |
aaggcacgacatgggatccaatacttatggagcaccaggttcgttaaacatatactagtttgacatggagagtacaaaatatatatgccatcttgagtta |
31120611 |
T |
|
| Q |
211 |
attccaacctcaaaacttgtctacataaaggaaacatatcactttttaatgtctagatttatatagtaaagtttcagtttggattctttcaggaaattac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31120612 |
attccaacctcaaaacttgtctacataaaggaaacatatcactttttaatgtctagatttatatagtaaagtttcaatttggattctttcaggaaattac |
31120711 |
T |
|
| Q |
311 |
tcaaacaaaggtggaaatagcgctaacaagaataccggtagtgataccacctattatcagaatgagacagttgagcccagtaattactatagctcatcaa |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || || |||| |
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| T |
31120712 |
tcaaacaaaggtggaaatagcgctaacaagaataccggtagtgataccacctattatcagaatgagacagtggagcccagtaattactacagttcctcaa |
31120811 |
T |
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| Q |
411 |
tctattatg |
419 |
Q |
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||||||||| |
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| T |
31120812 |
tctattatg |
31120820 |
T |
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