View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20594_low_21 (Length: 390)
Name: NF20594_low_21
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 28 - 373
Target Start/End: Original strand, 27420311 - 27420656
Alignment:
| Q |
28 |
gttgcactggtattgtgttggaaaccaccgccgaccaattaattccacaattatcatggctgagtttttggagtataaaacgaatgaataacccaatttg |
127 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27420311 |
gttgcaatggtattgtgttggaaaccaccgccgaccaattaattccacaattatcatggctgagtttttggaatataaaacgaatgaataacccaatttg |
27420410 |
T |
|
| Q |
128 |
caacaaatccagctcacnnnnnnnnctttctaaatcttcaatttgatcctttaaaaggggtgagaaaacccagcagtaacacttccaaaagtacaacgac |
227 |
Q |
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||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| |||| |
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| T |
27420411 |
caagaaatccagctcacttttttttctttctaaatcttcaatttgatcctttaaaaggggtgacgaaacccagtaataacacttccaaaagtacagcgac |
27420510 |
T |
|
| Q |
228 |
atccttgaagctatcatcattttcgacaagcttaccaacaaatctaaaggctacgacatccttgtgtgatcaatcattacattaagcaataggaaattca |
327 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27420511 |
atccttgaagctgtcatcattttcgacaagcttaccaacaaatctaaaggctacgacatccttgtgtgatcaatcataacattaagcaataggaaattca |
27420610 |
T |
|
| Q |
328 |
ttccaaattcttaatttgatcaaatattaataaattagatgaaggt |
373 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27420611 |
ttccaaattcttaatttgatcaaatattaataaattagatgaaggt |
27420656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 28 - 373
Target Start/End: Original strand, 44607518 - 44607863
Alignment:
| Q |
28 |
gttgcactggtattgtgttggaaaccaccgccgaccaattaattccacaattatcatggctgagtttttggagtataaaacgaatgaataacccaatttg |
127 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44607518 |
gttgcaatggtattgtgttggaaaccaccgccgaccaattaattccacaattatcatgactgagtttttggaatataaaacgaatgaataacccaatttg |
44607617 |
T |
|
| Q |
128 |
caacaaatccagctcacnnnnnnnnctttctaaatcttcaatttgatcctttaaaaggggtgagaaaacccagcagtaacacttccaaaagtacaacgac |
227 |
Q |
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||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| |||| |
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| T |
44607618 |
caagaaatccagctcacttttttttctttctaaatcttcaatttgatcctttaaaaggggtgacgaaacccagtaataacacttccaaaagtacagcgac |
44607717 |
T |
|
| Q |
228 |
atccttgaagctatcatcattttcgacaagcttaccaacaaatctaaaggctacgacatccttgtgtgatcaatcattacattaagcaataggaaattca |
327 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44607718 |
atccttgaagctgtcatcattttcgacaagcttaccaacaaatctaaaggctacgacatccttgtgtgatcaatcataacattaagcaataggaaattca |
44607817 |
T |
|
| Q |
328 |
ttccaaattcttaatttgatcaaatattaataaattagatgaaggt |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44607818 |
ttccaaattcttaatttgatcaaatattaataaattagatgaaggt |
44607863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 28 - 330
Target Start/End: Complemental strand, 18712362 - 18712059
Alignment:
| Q |
28 |
gttgcactggtattgtgttggaaaccaccgccgaccaattaattccacaattatcatggctgagtttttggagtataaaacgaatgaataacccaatttg |
127 |
Q |
| |
|
||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18712362 |
gttgcgctggtattgtgttggaaaccatcaccgaccaattaattccacaattatcatggctgagtttttggaatataaaacgaatgaataacccaatttg |
18712263 |
T |
|
| Q |
128 |
caacaaatccagctcacnnnnnnnn-ctttctaaatcttcaatttgatcctttaaaaggggtgagaaaacccagcagtaacacttccaaaagtacaacga |
226 |
Q |
| |
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||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || |
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| T |
18712262 |
caacaaatccaactcactttttttttctttctaaatcttcaatttgatcctttaaaaggggtgacgaaacccagcagtaacacttccaaaaggacagtga |
18712163 |
T |
|
| Q |
227 |
catccttgaagctatcatcattttcgacaagcttaccaacaaatctaaaggctacgacatccttgtgtgatcaatcattacattaagcaataggaaattc |
326 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18712162 |
catccttgaagctgtcatcattttcgacaagcttaccaacaaatctaaaggctacgacatccttgtgtgatcaatcattacattaagcaataggaaattc |
18712063 |
T |
|
| Q |
327 |
attc |
330 |
Q |
| |
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|||| |
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|
| T |
18712062 |
attc |
18712059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 204 - 362
Target Start/End: Complemental strand, 41290966 - 41290810
Alignment:
| Q |
204 |
taacacttccaaaagtacaacgacatccttgaagctatcatcattttcgacaagcttaccaacaaatctaaaggctacgacatccttgtgtgatcaatca |
303 |
Q |
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||||| ||||||||||||| |||| ||||||||| | ||| ||||| | |||||| | |||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
41290966 |
taacaattccaaaagtacagcgacttccttgaagttgtcaacatttccaacaagcattccaacagatccaaaggctacgacatccttgtgtgatcaatca |
41290867 |
T |
|
| Q |
304 |
ttacattaagcaataggaaattcattccaaattcttaatttgatcaaatattaataaat |
362 |
Q |
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||||||||| || | ||| ||||||| | |||||||||| |||||||||| |||||| |
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|
| T |
41290866 |
ttacattaaaca--cgtaaagtcattcctatttcttaatttcatcaaatattgataaat |
41290810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 310
Target Start/End: Complemental strand, 46111199 - 46111133
Alignment:
| Q |
244 |
tcattttcgacaagcttaccaacaaatctaaaggctacgacatccttgtgtgatcaatcattacatt |
310 |
Q |
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|||||| |||| |||||| ||||| || ||| |||| ||||||||||| ||||||||||||||||| |
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| T |
46111199 |
tcatttccgactagcttatcaacagattcaaatgctaagacatccttgtttgatcaatcattacatt |
46111133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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