View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20594_low_23 (Length: 380)

Name: NF20594_low_23
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20594_low_23
NF20594_low_23
[»] chr5 (4 HSPs)
chr5 (18-380)||(28398445-28398802)
chr5 (18-379)||(28390616-28390977)
chr5 (334-377)||(28398401-28398444)
chr5 (236-272)||(11079726-11079762)
[»] chr4 (4 HSPs)
chr4 (236-278)||(24572075-24572117)
chr4 (236-278)||(35765451-35765493)
chr4 (239-272)||(13216735-13216768)
chr4 (236-272)||(53840257-53840293)
[»] chr8 (3 HSPs)
chr8 (236-272)||(72804-72840)
chr8 (239-272)||(14976838-14976871)
chr8 (239-272)||(37044091-37044124)
[»] chr3 (2 HSPs)
chr3 (236-278)||(49906845-49906887)
chr3 (236-268)||(39722098-39722130)
[»] chr1 (2 HSPs)
chr1 (236-268)||(13694161-13694193)
chr1 (232-272)||(25089836-25089876)
[»] scaffold0018 (1 HSPs)
scaffold0018 (219-261)||(147234-147276)
[»] chr7 (1 HSPs)
chr7 (236-264)||(5467643-5467671)
[»] chr6 (2 HSPs)
chr6 (236-272)||(29064880-29064916)
chr6 (236-272)||(29119734-29119770)


Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 28398802 - 28398445
Alignment:
Q  18 actgttgtcatcaatcaatttctctcttcattctcatgatatcgagtttcaagctccaacttttttatcttgccaacctgcataaatcacaaatgttagc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28398802 actgttgtcatcaatcaatttctctcttcattctcatgatatctagtttcaagctccaacttttttatcttgccaacctgcataaatcacaagtgttagc 28398703  T
Q  118 atgaacatgatatttaattttctttgttcagataaatctttttcattgtgttagaaataaatcaagacaacaagaccagtagaacacatgtataatttaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28398702 atgaacatgatatttaattttctttgttcagataaatctttttcattgtgttagaaataaatcaagacaacaaga-cagtagaacacatgtataatttaa 28398604  T
Q  218 taaaattaggaattcatgttgatatatgaataaaaatatagacatgtgtataaatgtaaaatagaaataacaaataggtacatgtattgatatactacaa 317  Q
     |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||         
T  28398603 caaaattaggaatccatgttgatatatgactaaaaatatagacatgtgtataaatgtaaaatagaaataaaaaataggtacatgtattgatatac----g 28398508  T
Q  318 agtaaagaggtagccgtattgatatatgagtaaaaatatagataaattataacttaagtacca 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28398507 agtaaagaggtagccgtattgatatatgagtaaaaatatagataaattataacttaagtacca 28398445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 379
Target Start/End: Complemental strand, 28390977 - 28390616
Alignment:
Q  18 actgttgtcatcaatcaatttctctcttcattctcatgatatcgagtttcaagctccaacttttttatcttgccaacctgcataaatcacaaatgttagc 117  Q
    ||||||||||| || |||||||||||  ||||| ||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||| |||||||    
T  28390977 actgttgtcatgaagcaatttctctc--cattcccatgatatctagtttcaagctccaacttttttatcttgccaaaatgcataaatcacaagtgttagc 28390880  T
Q  118 atgaacatgatatttaattttctttgttcagataaatctttttcattgtgttagaaataaatcaagacaacaagaccagtagaacacatgtataatttaa 217  Q
    |||||||||||||||||||||||  |||| |||||||||||||||||||||| |||||||||||||||||||||| || |||||||| ||||||  ||||    
T  28390879 atgaacatgatatttaattttctgggttcggataaatctttttcattgtgttggaaataaatcaagacaacaagaacaatagaacacgtgtatagcttaa 28390780  T
Q  218 taaaattaggaattcatgttgatatatgaat-aaaaatatagacatgtgtataaatg--taaaatagaaat-aacaaataggtacatgtattgatatact 313  Q
     |||||||||||||||||||||||||||| | ||||||||||||| |||||||||||   |||||| |||| || ||||| ||||||||||||||||| |    
T  28390779 caaaattaggaattcatgttgatatatgactaaaaaatatagacacgtgtataaatgaaaaaaataaaaataaaaaaataagtacatgtattgatata-t 28390681  T
Q  314 acaaagtaaagaggtagccgtattgatatatgagtaaaaatatagataaattataacttaagtacc 379  Q
    |   |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28390680 a-tgagtaaagaggtaaccgtattgatatatgagtaaaaatatagataaattataacttaggtacc 28390616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 334 - 377
Target Start/End: Complemental strand, 28398444 - 28398401
Alignment:
Q  334 tattgatatatgagtaaaaatatagataaattataacttaagta 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28398444 tattgatatatgagtaaaaatatagataaattataacttaagta 28398401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 11079762 - 11079726
Alignment:
Q  236 ttgatatatgaataaaaatatagacatgtgtataaat 272  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  11079762 ttgatatttgaataaaaatatagacatatgtataaat 11079726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 24572075 - 24572117
Alignment:
Q  236 ttgatatatgaataaaaatatagacatgtgtataaatgtaaaa 278  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  24572075 ttgatatatgaataaaaatatagacatgtgtataaatggaaaa 24572117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 278
Target Start/End: Original strand, 35765451 - 35765493
Alignment:
Q  236 ttgatatatgaataaaaatatagacatgtgtataaatgtaaaa 278  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  35765451 ttgatatatgaataaaaatatagacatgtgtataaatttaaaa 35765493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 272
Target Start/End: Original strand, 13216735 - 13216768
Alignment:
Q  239 atatatgaataaaaatatagacatgtgtataaat 272  Q
    ||||| ||||||||||||||||||||||||||||    
T  13216735 atatacgaataaaaatatagacatgtgtataaat 13216768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 53840293 - 53840257
Alignment:
Q  236 ttgatatatgaataaaaatatagacatgtgtataaat 272  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  53840293 ttgatatatgaattaaaatataggcatgtgtataaat 53840257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 72804 - 72840
Alignment:
Q  236 ttgatatatgaataaaaatatagacatgtgtataaat 272  Q
    |||||||||||||||||||||||||||||||||||||    
T  72804 ttgatatatgaataaaaatatagacatgtgtataaat 72840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 272
Target Start/End: Complemental strand, 14976871 - 14976838
Alignment:
Q  239 atatatgaataaaaatatagacatgtgtataaat 272  Q
    ||||||||||||||||||||||||||||||||||    
T  14976871 atatatgaataaaaatatagacatgtgtataaat 14976838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 272
Target Start/End: Complemental strand, 37044124 - 37044091
Alignment:
Q  239 atatatgaataaaaatatagacatgtgtataaat 272  Q
    |||||||| |||||||||||||||||||||||||    
T  37044124 atatatgagtaaaaatatagacatgtgtataaat 37044091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 49906887 - 49906845
Alignment:
Q  236 ttgatatatgaataaaaatatagacatgtgtataaatgtaaaa 278  Q
    |||||||||||||||||||||||||| |||||||||| |||||    
T  49906887 ttgatatatgaataaaaatatagacaagtgtataaatttaaaa 49906845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 39722130 - 39722098
Alignment:
Q  236 ttgatatatgaataaaaatatagacatgtgtat 268  Q
    ||||||||||||||||||||||| |||||||||    
T  39722130 ttgatatatgaataaaaatataggcatgtgtat 39722098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 13694193 - 13694161
Alignment:
Q  236 ttgatatatgaataaaaatatagacatgtgtat 268  Q
    |||||||||||||||||||||||||||||||||    
T  13694193 ttgatatatgaataaaaatatagacatgtgtat 13694161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 25089876 - 25089836
Alignment:
Q  232 catgttgatatatgaataaaaatatagacatgtgtataaat 272  Q
    ||||||||||||||| |||||||||||| || |||||||||    
T  25089876 catgttgatatatgagtaaaaatatagagatttgtataaat 25089836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 261
Target Start/End: Complemental strand, 147276 - 147234
Alignment:
Q  219 aaaattaggaattcatgttgatatatgaataaaaatatagaca 261  Q
    ||||||||| | || ||||||||||||||||||||||||||||    
T  147276 aaaattaggtactcgtgttgatatatgaataaaaatatagaca 147234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 264
Target Start/End: Original strand, 5467643 - 5467671
Alignment:
Q  236 ttgatatatgaataaaaatatagacatgt 264  Q
    |||||||||||||||||||||||||||||    
T  5467643 ttgatatatgaataaaaatatagacatgt 5467671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 29064880 - 29064916
Alignment:
Q  236 ttgatatatgaataaaaatatagacatgtgtataaat 272  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  29064880 ttgatatatgaataaaaatatagacatatgtacaaat 29064916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 29119734 - 29119770
Alignment:
Q  236 ttgatatatgaataaaaatatagacatgtgtataaat 272  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  29119734 ttgatatatgaataaaaatatagacatatgtacaaat 29119770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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