View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20594_low_25 (Length: 323)
Name: NF20594_low_25
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 19067947 - 19068232
Alignment:
| Q |
19 |
actcgtccaatcttcccgtgcttaggtacattgagtaggccgtcattggatttcattgacaaagaactatgaggccagaattcctaaacaccttatttcc |
118 |
Q |
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| T |
19067947 |
actcgtccaatcttcccgtgcttaggtacattgagtaggccgccattggatttcatcgacaaagaactatgaggccagaattcctaaacaccttatt-cc |
19068045 |
T |
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| Q |
119 |
ctggttgctcaaagtctgcatgtgttttcgaagctcatgcgtttcacaacaccatatgccgagttcttcaagaccttgaaactattcgacgagaatctag |
218 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
19068046 |
ctggttgctcaaagtctgcatgtgttt-cgaagctcatgcgtttcaaaacaccatatgccgagttgttcaagaccttgaaactattcgacgagaatctag |
19068144 |
T |
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| Q |
219 |
ctcactattaaagaacctcaaagctcatgattggtaaaagaattctaatcttaaaccgttcatggcatatattagaattgagaagcac |
306 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
19068145 |
ctcactattaaagaatctcaaagctcatgattggtaaaagaattctaatcttaaaccgttcatggcatatattagaaatcagaagcac |
19068232 |
T |
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