View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20594_low_26 (Length: 321)

Name: NF20594_low_26
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20594_low_26
NF20594_low_26
[»] chr1 (1 HSPs)
chr1 (12-302)||(41756051-41756341)


Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 12 - 302
Target Start/End: Complemental strand, 41756341 - 41756051
Alignment:
Q  12 aagaaacaacttgaatactgagaattaagtaacacatattttcaaataaaaataatacgatcaaatcaaatgataaattatattaagagtgaatcttata 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41756341 aagaaacaacttgaatactgagaattaagtaacacatattttcaaataaaaataatacgatcaaatcaaatgataaattatatttagagtgaatcttata 41756242  T
Q  112 tcaaaccaaaaccnnnnnnnagaggtccatattagacacatattatttattcatgaaaatttaaaattgactagttataagttattttgaatcggtcgac 211  Q
    |||||||||||||       ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41756241 tcaaaccaaaacctttttttagaggtccatattagacacaccttatttattcatgaaaatttaaaattgactagttatgagttattttgaatcggtcgac 41756142  T
Q  212 tttgaggagaactctatatccgagtcaaaacatattgggactgaaaaataacgtggcaaagccacaatccctactctcgacgccaaacgag 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41756141 tttgaggagaactctatatccgagtcaaaacatattgggactgaaaaataacgtggcaaagccacaatccctactctcgacaccaaacgag 41756051  T

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