View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20594_low_28 (Length: 307)
Name: NF20594_low_28
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 699933 - 700200
Alignment:
| Q |
20 |
gttaggtatacaattttttcgcctttggatggacaaccgtgtgctgatcatgatagggctagtggtgaaggtgttcagcctcaagagtatacgattatca |
119 |
Q |
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| T |
699933 |
gttaggtatacaattttttcgcctttggatggacaaccgtgtgctgatcatgatagggctagtggtgaaggtgttcagcctcaagagtatatgattatca |
700032 |
T |
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| Q |
120 |
agatggagttggtatcgccttttcctgataaatttaaggctcttgaaggaaagaaggtttttcttgctgctgcgatgttgagacccgagactatgtatgg |
219 |
Q |
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| T |
700033 |
agatggagttggtatcgccttttcctgataaatttaaggctcttgaaggaaagaaggtttttcttgctgctgcgacgttgagacccgagactatgtatgg |
700132 |
T |
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| Q |
220 |
tcaaacaaatgcatggattttgcctgatggaaaatatggagcatttgaaatcactgaaactgaggtct |
287 |
Q |
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| T |
700133 |
tcaaacaaatgcatgggttttgcctgatggaaaatatggagcatttgaaatcactgaaactgaggtct |
700200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 20 - 285
Target Start/End: Complemental strand, 23262190 - 23261925
Alignment:
| Q |
20 |
gttaggtatacaattttttcgcctttggatggacaaccgtgtgctgatcatgatagggctagtggtgaaggtgttcagcctcaagagtatacgattatca |
119 |
Q |
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|||||||||||| |||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
23262190 |
gttaggtatacagttttttcgccattggatggacagccttgtgcggatcatgatagggctagtggtgaaggtgttcagccgcaagagtatacgattatta |
23262091 |
T |
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| Q |
120 |
agatggagttggtatcgccttttcctgataaatttaaggctcttgaaggaaagaaggtttttcttgctgctgcgatgttgagacccgagactatgtatgg |
219 |
Q |
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| T |
23262090 |
agatggaggtggtttctccttttcctgagaagtttaaggttttggagggaaagaaggtttttcttgctgcggcgacgttgaggcctgagactatgtatgg |
23261991 |
T |
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| Q |
220 |
tcaaacaaatgcatggattttgcctgatggaaaatatggagcatttgaaatcactgaaactgaggt |
285 |
Q |
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|||||||||||| ||| | ||||||||||| |||||||| || ||||| || | |||||| ||||| |
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| T |
23261990 |
tcaaacaaatgcttgggtgttgcctgatgggaaatatggggcttttgagattaatgaaacggaggt |
23261925 |
T |
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