View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20594_low_31 (Length: 266)

Name: NF20594_low_31
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20594_low_31
NF20594_low_31
[»] chr4 (20 HSPs)
chr4 (1-195)||(54818767-54818963)
chr4 (211-248)||(15725385-15725422)
chr4 (211-248)||(50678001-50678038)
chr4 (212-248)||(14863173-14863209)
chr4 (212-248)||(20458801-20458837)
chr4 (212-248)||(54818663-54818699)
chr4 (211-249)||(6946845-6946883)
chr4 (215-248)||(13211512-13211545)
chr4 (212-248)||(6137468-6137504)
chr4 (212-248)||(9744101-9744137)
chr4 (212-248)||(11777465-11777501)
chr4 (212-248)||(23383895-23383931)
chr4 (212-248)||(26335947-26335983)
chr4 (216-248)||(40496646-40496678)
chr4 (212-248)||(46106880-46106916)
chr4 (212-248)||(52306974-52307010)
chr4 (214-248)||(4505235-4505269)
chr4 (215-248)||(49425732-49425765)
chr4 (212-248)||(142825-142861)
chr4 (212-248)||(49606202-49606238)
[»] chr8 (28 HSPs)
chr8 (211-248)||(13269438-13269475)
chr8 (211-248)||(30207123-30207160)
chr8 (211-248)||(39922478-39922515)
chr8 (212-248)||(10616248-10616284)
chr8 (212-248)||(26868127-26868163)
chr8 (212-248)||(29377939-29377975)
chr8 (211-248)||(8258525-8258562)
chr8 (211-248)||(17883922-17883959)
chr8 (212-245)||(32487134-32487167)
chr8 (211-248)||(34970002-34970039)
chr8 (212-248)||(1201626-1201662)
chr8 (212-248)||(17691172-17691208)
chr8 (212-248)||(27545717-27545753)
chr8 (212-248)||(32068979-32069015)
chr8 (212-248)||(34102957-34102993)
chr8 (212-248)||(42556639-42556675)
chr8 (211-249)||(25120279-25120317)
chr8 (215-248)||(3369672-3369705)
chr8 (211-248)||(7977305-7977342)
chr8 (212-245)||(10776932-10776965)
chr8 (211-248)||(17884131-17884168)
chr8 (215-248)||(26629989-26630022)
chr8 (211-248)||(35436873-35436910)
chr8 (220-248)||(184071-184099)
chr8 (212-248)||(2823805-2823841)
chr8 (212-248)||(7090034-7090070)
chr8 (212-248)||(23054021-23054057)
chr8 (212-248)||(36899694-36899730)
[»] chr6 (7 HSPs)
chr6 (211-248)||(4898082-4898119)
chr6 (212-248)||(33730719-33730755)
chr6 (212-248)||(25061854-25061890)
chr6 (212-248)||(30525311-30525347)
chr6 (212-248)||(4838482-4838518)
chr6 (212-248)||(11100260-11100296)
chr6 (212-248)||(18102890-18102926)
[»] chr5 (20 HSPs)
chr5 (211-248)||(12909978-12910015)
chr5 (211-248)||(33696242-33696279)
chr5 (212-248)||(2528958-2528994)
chr5 (212-248)||(4083927-4083963)
chr5 (212-248)||(4738121-4738157)
chr5 (212-248)||(7944476-7944512)
chr5 (212-248)||(17210204-17210240)
chr5 (212-248)||(28747952-28747988)
chr5 (211-248)||(13710987-13711024)
chr5 (212-248)||(3039063-3039099)
chr5 (212-248)||(6436612-6436648)
chr5 (212-248)||(14369956-14369992)
chr5 (212-248)||(17421883-17421919)
chr5 (212-248)||(32736449-32736485)
chr5 (212-248)||(33832907-33832943)
chr5 (211-248)||(10470946-10470983)
chr5 (211-248)||(17233230-17233267)
chr5 (215-248)||(25912002-25912035)
chr5 (211-248)||(33832683-33832720)
chr5 (212-248)||(8410587-8410623)
[»] chr3 (13 HSPs)
chr3 (211-248)||(3800391-3800428)
chr3 (212-248)||(17605667-17605703)
chr3 (212-248)||(50801768-50801804)
chr3 (212-248)||(50874076-50874112)
chr3 (211-248)||(13349329-13349366)
chr3 (215-248)||(33837774-33837807)
chr3 (212-248)||(31039519-31039555)
chr3 (212-248)||(54244815-54244851)
chr3 (211-248)||(12127735-12127772)
chr3 (215-248)||(22894512-22894545)
chr3 (211-248)||(30033204-30033241)
chr3 (212-248)||(27317834-27317870)
chr3 (220-248)||(29239564-29239592)
[»] chr2 (15 HSPs)
chr2 (211-248)||(768749-768786)
chr2 (212-248)||(1576607-1576643)
chr2 (212-248)||(11675106-11675142)
chr2 (212-248)||(16513275-16513311)
chr2 (212-248)||(23387331-23387367)
chr2 (212-248)||(32601345-32601381)
chr2 (212-248)||(34082521-34082557)
chr2 (211-248)||(8386650-8386687)
chr2 (211-248)||(13002226-13002263)
chr2 (212-248)||(33739501-33739537)
chr2 (212-248)||(41528100-41528136)
chr2 (215-248)||(17528491-17528524)
chr2 (212-248)||(21545840-21545876)
chr2 (212-248)||(29512281-29512317)
chr2 (212-248)||(37169511-37169547)
[»] chr1 (24 HSPs)
chr1 (211-248)||(3273537-3273574)
chr1 (211-248)||(48643972-48644009)
chr1 (212-248)||(158369-158405)
chr1 (212-248)||(10558167-10558203)
chr1 (212-248)||(16073393-16073429)
chr1 (212-248)||(50559204-50559240)
chr1 (212-248)||(51432051-51432087)
chr1 (214-248)||(41146454-41146488)
chr1 (212-249)||(6192379-6192416)
chr1 (211-248)||(8643197-8643234)
chr1 (212-248)||(462973-463009)
chr1 (212-248)||(13264717-13264753)
chr1 (212-248)||(16005769-16005805)
chr1 (212-248)||(23413839-23413875)
chr1 (212-248)||(24770586-24770622)
chr1 (212-248)||(26842953-26842989)
chr1 (212-248)||(34515084-34515120)
chr1 (213-248)||(32156187-32156222)
chr1 (211-248)||(32994141-32994178)
chr1 (212-248)||(27787800-27787836)
chr1 (212-248)||(28454909-28454945)
chr1 (212-248)||(33676218-33676254)
chr1 (212-248)||(34306395-34306431)
chr1 (212-248)||(45818985-45819021)
[»] chr7 (13 HSPs)
chr7 (212-248)||(18352270-18352306)
chr7 (212-248)||(28912287-28912323)
chr7 (211-248)||(6559559-6559596)
chr7 (211-248)||(11766326-11766363)
chr7 (211-248)||(27168212-27168249)
chr7 (212-248)||(454309-454345)
chr7 (212-248)||(939100-939136)
chr7 (212-248)||(6736468-6736504)
chr7 (212-248)||(9401611-9401647)
chr7 (212-248)||(41407547-41407583)
chr7 (215-248)||(25818690-25818723)
chr7 (212-248)||(15957169-15957205)
chr7 (216-248)||(19069601-19069633)
[»] scaffold0325 (1 HSPs)
scaffold0325 (215-248)||(6743-6776)
[»] scaffold1808 (1 HSPs)
scaffold1808 (216-248)||(768-800)
[»] scaffold0627 (1 HSPs)
scaffold0627 (212-248)||(4263-4299)
[»] scaffold0418 (1 HSPs)
scaffold0418 (216-248)||(5356-5388)
[»] scaffold0217 (1 HSPs)
scaffold0217 (212-248)||(20575-20611)
[»] scaffold0015 (1 HSPs)
scaffold0015 (212-248)||(9688-9724)
[»] scaffold1717 (1 HSPs)
scaffold1717 (215-248)||(1339-1372)
[»] scaffold1527 (1 HSPs)
scaffold1527 (215-248)||(1585-1618)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 54818963 - 54818767
Alignment:
Q  1 acgaaataatgtttacaaacacttaatttgagataggaatactgaaataggatcacaacgtctttcgctaagatgttccactgatagag--tgcaaactg 98  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||  |||||||||    
T  54818963 acgaaataatgtttacaaacacttaatttgagacaggaatactgaaatcggatcacaacgtctttcactaagatgttccactgatagagagtgcaaactg 54818864  T
Q  99 caaagtgaaagtattactttatacgtgatatatcaaatgaatgcaaactcaacaattacaaattattgcggttgatttgttaagaaaacatatatat 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  54818863 caaagtgaaagtattactttatacgtgatatatcaaatgaatgcaaactcaacaattacaaattattgcggttgatttgttaagaaaatatatatat 54818767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 15725422 - 15725385
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15725422 ttaggatacacccactagtttttattaaggtgtgtttt 15725385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 50678038 - 50678001
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||||||||||||||||    
T  50678038 ttaggatacacccactagtttttattaaggtgtgtttt 50678001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 14863209 - 14863173
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  14863209 taggatacacccactagtttttattaaggtgtgtttt 14863173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 20458801 - 20458837
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  20458801 taggatacacccactagtttttattaaggtgtgtttt 20458837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 54818699 - 54818663
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  54818699 taggatacacccactagtttttattaaggtgtgtttt 54818663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 6946883 - 6946845
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgttttg 249  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  6946883 ttaggatacatccactagtttttattaaggtgtgttttg 6946845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 13211512 - 13211545
Alignment:
Q  215 gatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||||||||||||    
T  13211512 gatacacccactagtttttattaaggtgtgtttt 13211545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 6137468 - 6137504
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||||||| |||||||    
T  6137468 taggatacacccactagtttttattaaggcgtgtttt 6137504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 9744101 - 9744137
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||||| |||||||||    
T  9744101 taggatacacccactagtttttattaacgtgtgtttt 9744137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 11777465 - 11777501
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||| ||||||    
T  11777465 taggatacacccactagtttttattaaggtatgtttt 11777501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 23383895 - 23383931
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||| |||||||||||||||||||||    
T  23383895 taggatacacccactggtttttattaaggtgtgtttt 23383931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 26335983 - 26335947
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||| ||||    
T  26335983 taggatacacccactagtttttattaaggtgtatttt 26335947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 40496678 - 40496646
Alignment:
Q  216 atacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||    
T  40496678 atacacccactagtttttattaaggtgtgtttt 40496646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 46106916 - 46106880
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||||| |||||||||    
T  46106916 taggatacacccactagtttttattaaagtgtgtttt 46106880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 52307010 - 52306974
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||| ||||||||||||||||||||||||||    
T  52307010 taggatacactcactagtttttattaaggtgtgtttt 52306974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 4505235 - 4505269
Alignment:
Q  214 ggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||| ||||||||||||||||||||    
T  4505235 ggatacacccactaatttttattaaggtgtgtttt 4505269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 49425732 - 49425765
Alignment:
Q  215 gatacacccactagtttttattaaggtgtgtttt 248  Q
    |||| |||||||||||||||||||||||||||||    
T  49425732 gatatacccactagtttttattaaggtgtgtttt 49425765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 142861 - 142825
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  142861 taggatacaccaactagtttttactaaggtgtgtttt 142825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 49606238 - 49606202
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  49606238 taggatacacccattagtttttattagggtgtgtttt 49606202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 13269475 - 13269438
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13269475 ttaggatacacccactagtttttattaaggtgtgtttt 13269438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 30207123 - 30207160
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30207123 ttaggatacacccactagtttttattaaggtgtgtttt 30207160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 39922515 - 39922478
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39922515 ttaggatacacccactagtttttattaaggtgtgtttt 39922478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 10616248 - 10616284
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  10616248 taggatacacccactagtttttattaaggtgtgtttt 10616284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 26868163 - 26868127
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  26868163 taggatacacccactagtttttattaaggtgtgtttt 26868127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 29377975 - 29377939
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  29377975 taggatacacccactagtttttattaaggtgtgtttt 29377939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 8258562 - 8258525
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||| |||||||||    
T  8258562 ttaggatacacccactagtttttattaatgtgtgtttt 8258525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 17883922 - 17883959
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  17883922 ttaggatacacccactagtttttgttaaggtgtgtttt 17883959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 32487167 - 32487134
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgt 245  Q
    ||||||||||||||||||||||||||||||||||    
T  32487167 taggatacacccactagtttttattaaggtgtgt 32487134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 34970039 - 34970002
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||| |||||||||||||||||||||||||||    
T  34970039 ttaggatacatccactagtttttattaaggtgtgtttt 34970002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 1201626 - 1201662
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||| ||||||||||||||||||||    
T  1201626 taggatacacccactaatttttattaaggtgtgtttt 1201662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 17691172 - 17691208
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||| ||||||||||||||||||||    
T  17691172 taggatacacccactaatttttattaaggtgtgtttt 17691208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 27545717 - 27545753
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||||||| |||||||    
T  27545717 taggatacacccactagtttttattaaggcgtgtttt 27545753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 32068979 - 32069015
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||| |||||||||||||||||||||||||    
T  32068979 taggatacaccaactagtttttattaaggtgtgtttt 32069015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 34102957 - 34102993
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||| ||||||||||||||||||||||||    
T  34102957 taggatacacccgctagtttttattaaggtgtgtttt 34102993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 42556639 - 42556675
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||| ||||||||||    
T  42556639 taggatacacccactagtttttattagggtgtgtttt 42556675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 25120279 - 25120317
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgttttg 249  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  25120279 ttaggatacacccacaaatttttattaaggtgtgttttg 25120317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 3369672 - 3369705
Alignment:
Q  215 gatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||| |||||||||||||||||||||||||||    
T  3369672 gatacagccactagtttttattaaggtgtgtttt 3369705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 7977342 - 7977305
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  7977342 ttaggatacatccactaatttttattaaggtgtgtttt 7977305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 10776932 - 10776965
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgt 245  Q
    |||||||||||||||| |||||||||||||||||    
T  10776932 taggatacacccactaatttttattaaggtgtgt 10776965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 17884168 - 17884131
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  17884168 ttaggatacacccactagtttttatgaagatgtgtttt 17884131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 26629989 - 26630022
Alignment:
Q  215 gatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||| |||||||||||||||||||||||||||    
T  26629989 gatacatccactagtttttattaaggtgtgtttt 26630022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 35436910 - 35436873
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  35436910 ttaggatacacccactaattttcattaaggtgtgtttt 35436873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 184071 - 184099
Alignment:
Q  220 acccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||    
T  184071 acccactagtttttattaaggtgtgtttt 184099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 2823841 - 2823805
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||| |||||||||| |||||||||    
T  2823841 taggatacacccactaatttttattaaagtgtgtttt 2823805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 7090070 - 7090034
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||| | |||||||||||||||||||||||||    
T  7090070 taggatacatctactagtttttattaaggtgtgtttt 7090034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 23054057 - 23054021
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||| |||||||||||| |||||||    
T  23054057 taggatacacccactactttttattaaggcgtgtttt 23054021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 36899694 - 36899730
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  36899694 taggacacacctactagtttttattaaggtgtgtttt 36899730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 4898082 - 4898119
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4898082 ttaggatacacccactagtttttattaaggtgtgtttt 4898119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 33730755 - 33730719
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  33730755 taggatacacccactagtttttattaaggtgtgtttt 33730719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 25061890 - 25061854
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||| ||||||||||||||||||||||||||    
T  25061890 taggatacacgcactagtttttattaaggtgtgtttt 25061854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 30525311 - 30525347
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||| ||||||||||||||||||||||||||    
T  30525311 taggatacactcactagtttttattaaggtgtgtttt 30525347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 4838518 - 4838482
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  4838518 taggatacacccattagtttctattaaggtgtgtttt 4838482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 11100296 - 11100260
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||| |||||||||| |||||||||    
T  11100296 taggatacacccactaatttttattaatgtgtgtttt 11100260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 18102926 - 18102890
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||  ||||||||||||||||||||||||||    
T  18102926 taggatacattcactagtttttattaaggtgtgtttt 18102890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 12909978 - 12910015
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12909978 ttaggatacacccactagtttttattaaggtgtgtttt 12910015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 33696279 - 33696242
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33696279 ttaggatacacccactagtttttattaaggtgtgtttt 33696242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 2528994 - 2528958
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  2528994 taggatacacccactagtttttattaaggtgtgtttt 2528958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 4083963 - 4083927
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  4083963 taggatacacccactagtttttattaaggtgtgtttt 4083927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 4738157 - 4738121
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  4738157 taggatacacccactagtttttattaaggtgtgtttt 4738121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 7944512 - 7944476
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  7944512 taggatacacccactagtttttattaaggtgtgtttt 7944476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 17210240 - 17210204
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  17210240 taggatacacccactagtttttattaaggtgtgtttt 17210204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 28747988 - 28747952
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  28747988 taggatacacccactagtttttattaaggtgtgtttt 28747952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 13710987 - 13711024
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||| |||||||||||||||||||||||||||    
T  13710987 ttaggatacatccactagtttttattaaggtgtgtttt 13711024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 3039099 - 3039063
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||||| |||||||||    
T  3039099 taggatacacccactagtttttattaaagtgtgtttt 3039063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 6436648 - 6436612
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||| ||||    
T  6436648 taggatacacccactagtttttattaaggtgtatttt 6436612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 14369992 - 14369956
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||| ||||||||||    
T  14369992 taggatacacccactagtttttattatggtgtgtttt 14369956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 17421919 - 17421883
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||| ||||||||||||||||||||    
T  17421919 taggatacacccactaatttttattaaggtgtgtttt 17421883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 32736485 - 32736449
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||| ||||||||||||||||||||||||||    
T  32736485 taggatacactcactagtttttattaaggtgtgtttt 32736449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 33832943 - 33832907
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||| ||||||||||||||||||||    
T  33832943 taggatacacccactaatttttattaaggtgtgtttt 33832907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 10470946 - 10470983
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  10470946 ttaggatacacccactagtttttatgaagttgtgtttt 10470983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 17233230 - 17233267
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  17233230 ttaggatacacctactaatttttattaaggtgtgtttt 17233267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 25912002 - 25912035
Alignment:
Q  215 gatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||| ||||||||||||||||||||||    
T  25912002 gatacacccaccagtttttattaaggtgtgtttt 25912035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 33832683 - 33832720
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  33832683 ttaggatacacccgctaatttttattaaggtgtgtttt 33832720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 8410587 - 8410623
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||| || |||||||||||||||||||||||    
T  8410587 taggatacacacattagtttttattaaggtgtgtttt 8410623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 3800428 - 3800391
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3800428 ttaggatacacccactagtttttattaaggtgtgtttt 3800391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 17605703 - 17605667
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  17605703 taggatacacccactagtttttattaaggtgtgtttt 17605667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 50801804 - 50801768
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  50801804 taggatacacccactagtttttattaaggtgtgtttt 50801768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 50874076 - 50874112
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  50874076 taggatacacccactagtttttattaaggtgtgtttt 50874112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 13349366 - 13349329
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  13349366 ttaggatacactcactagtttttattaaggtgtgtttt 13349329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 33837774 - 33837807
Alignment:
Q  215 gatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||||||||||||    
T  33837774 gatacacccactagtttttattaaggtgtgtttt 33837807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 31039519 - 31039555
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||| |||||||||||||||||||||||||    
T  31039519 taggatacacctactagtttttattaaggtgtgtttt 31039555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 54244851 - 54244815
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||| |||||||||||||||||||||||||    
T  54244851 taggatacacctactagtttttattaaggtgtgtttt 54244815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 12127772 - 12127735
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  12127772 ttaggatacacccactgatttttattaaggtgtgtttt 12127735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 22894512 - 22894545
Alignment:
Q  215 gatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||| |||||||||||||||||||||||||||    
T  22894512 gatacatccactagtttttattaaggtgtgtttt 22894545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 30033241 - 30033204
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  30033241 ttaggatacatccattagtttttattaaggtgtgtttt 30033204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 27317870 - 27317834
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  27317870 taggatacacctactagtttttattaaggcgtgtttt 27317834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 29239564 - 29239592
Alignment:
Q  220 acccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||    
T  29239564 acccactagtttttattaaggtgtgtttt 29239592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 768786 - 768749
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||||||||||||||||    
T  768786 ttaggatacacccactagtttttattaaggtgtgtttt 768749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 1576607 - 1576643
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  1576607 taggatacacccactagtttttattaaggtgtgtttt 1576643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 11675106 - 11675142
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  11675106 taggatacacccactagtttttattaaggtgtgtttt 11675142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 16513311 - 16513275
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  16513311 taggatacacccactagtttttattaaggtgtgtttt 16513275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 23387367 - 23387331
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  23387367 taggatacacccactagtttttattaaggtgtgtttt 23387331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 32601345 - 32601381
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  32601345 taggatacacccactagtttttattaaggtgtgtttt 32601381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 34082521 - 34082557
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  34082521 taggatacacccactagtttttattaaggtgtgtttt 34082557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 8386650 - 8386687
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||| |||||||||||||||    
T  8386650 ttaggatacacccactagttttcattaaggtgtgtttt 8386687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 13002263 - 13002226
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||| |||||||||||||||||||||||||||    
T  13002263 ttaggatacatccactagtttttattaaggtgtgtttt 13002226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 33739501 - 33739537
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||| |||||||||||||||||||||||    
T  33739501 taggatacacccattagtttttattaaggtgtgtttt 33739537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 41528136 - 41528100
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||| ||||||||||||||||||||    
T  41528136 taggatacacccactaatttttattaaggtgtgtttt 41528100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 17528491 - 17528524
Alignment:
Q  215 gatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||| |||||||||||||||||||||||||||    
T  17528491 gatacatccactagtttttattaaggtgtgtttt 17528524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 21545840 - 21545876
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  21545840 taggatacaccaactagtttttattaaggtgcgtttt 21545876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 29512317 - 29512281
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  29512317 taggatacacctactaatttttattaaggtgtgtttt 29512281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 37169511 - 37169547
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  37169511 taggatacacctactagtttttattaaggtgtttttt 37169547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 3273574 - 3273537
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3273574 ttaggatacacccactagtttttattaaggtgtgtttt 3273537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 48643972 - 48644009
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48643972 ttaggatacacccactagtttttattaaggtgtgtttt 48644009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 158369 - 158405
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  158369 taggatacacccactagtttttattaaggtgtgtttt 158405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 10558167 - 10558203
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  10558167 taggatacacccactagtttttattaaggtgtgtttt 10558203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 16073393 - 16073429
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  16073393 taggatacacccactagtttttattaaggtgtgtttt 16073429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 50559204 - 50559240
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  50559204 taggatacacccactagtttttattaaggtgtgtttt 50559240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 51432087 - 51432051
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  51432087 taggatacacccactagtttttattaaggtgtgtttt 51432051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 41146488 - 41146454
Alignment:
Q  214 ggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||    
T  41146488 ggatacacccactagtttttattaaggtgtgtttt 41146454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 6192379 - 6192416
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgttttg 249  Q
    |||||||||||||||| |||||||||||||||||||||    
T  6192379 taggatacacccactattttttattaaggtgtgttttg 6192416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 8643234 - 8643197
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||| |||||||||||||||||||||||||||||    
T  8643234 ttaggatatacccactagtttttattaaggtgtgtttt 8643197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 462973 - 463009
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||| ||||    
T  462973 taggatacacccactagtttttattaaggtgtatttt 463009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 13264717 - 13264753
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||| |||||||||||||||||||||||||||||||    
T  13264717 taggaaacacccactagtttttattaaggtgtgtttt 13264753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 16005805 - 16005769
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||| ||||||||||||||||||||    
T  16005805 taggatacacccactaatttttattaaggtgtgtttt 16005769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 23413875 - 23413839
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||| |||||||||||||||||||||||||    
T  23413875 taggatacaccaactagtttttattaaggtgtgtttt 23413839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 24770586 - 24770622
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||| ||||||||||||||||    
T  24770586 taggatacacccactagtttatattaaggtgtgtttt 24770622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 26842953 - 26842989
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||| |||||||||||||||||||||||||||||    
T  26842953 taggatatacccactagtttttattaaggtgtgtttt 26842989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 34515084 - 34515120
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||| ||||||||||||||||||||||    
T  34515084 taggatacacccaccagtttttattaaggtgtgtttt 34515120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 248
Target Start/End: Complemental strand, 32156222 - 32156187
Alignment:
Q  213 aggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||| |||||||||||||||||||||||||||    
T  32156222 aggatacatccactagtttttattaaggtgtgtttt 32156187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 32994141 - 32994178
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  32994141 ttaggatacacccactagtttttatttaggagtgtttt 32994178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 27787800 - 27787836
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  27787800 taggatacatccactagtttttattaaggtgtatttt 27787836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 28454945 - 28454909
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  28454945 taggatacatccactaatttttattaaggtgtgtttt 28454909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 33676254 - 33676218
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  33676254 taggatacacacactagtttttattaaggtgtatttt 33676218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 34306395 - 34306431
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  34306395 taggatacaccaactagtttttattaaagtgtgtttt 34306431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 45819021 - 45818985
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  45819021 taggatacatccactagtttttattaaggtatgtttt 45818985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 18352270 - 18352306
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  18352270 taggatacacccactagtttttattaaggtgtgtttt 18352306  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 28912323 - 28912287
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  28912323 taggatacacccactagtttttattaaggtgtgtttt 28912287  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 6559596 - 6559559
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  6559596 ttaggatacacccactaatttttattaaggtgtgtttt 6559559  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 11766363 - 11766326
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  11766363 ttaggatacacccactagtttttattaaggtgtatttt 11766326  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 27168212 - 27168249
Alignment:
Q  211 ttaggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||| |||||||||||||||||||||||||||    
T  27168212 ttaggatacatccactagtttttattaaggtgtgtttt 27168249  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 454345 - 454309
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||| ||||||||||||||||||||||||||||||    
T  454345 taggattcacccactagtttttattaaggtgtgtttt 454309  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 939136 - 939100
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||| ||||||||||||||||||||    
T  939136 taggatacacccactactttttattaaggtgtgtttt 939100  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 6736468 - 6736504
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||| |||||||||||||    
T  6736468 taggatacacccactagtttttactaaggtgtgtttt 6736504  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 9401611 - 9401647
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||| ||||||||||||||||||||    
T  9401611 taggatacacccactaatttttattaaggtgtgtttt 9401647  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 41407583 - 41407547
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||| |||||||||||||||||||||||||||||||    
T  41407583 taggaaacacccactagtttttattaaggtgtgtttt 41407547  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 25818723 - 25818690
Alignment:
Q  215 gatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||| |||||||||||||||||||||||||    
T  25818723 gatacacctactagtttttattaaggtgtgtttt 25818690  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 15957169 - 15957205
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  15957169 taggatatacctactagtttttattaaggtgtgtttt 15957205  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 19069633 - 19069601
Alignment:
Q  216 atacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||| |||||||||||||||||||||||||    
T  19069633 atacaccaactagtttttattaaggtgtgtttt 19069601  T

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Target: scaffold0325 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 248
Target Start/End: Complemental strand, 6776 - 6743
Alignment:
Q  215 gatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||||||||||||||||||||||||    
T  6776 gatacacccactagtttttattaaggtgtgtttt 6743  T

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Target: scaffold1808 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1808
Description:

Target: scaffold1808; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 800 - 768
Alignment:
Q  216 atacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||    
T  800 atacacccactagtttttattaaggtgtgtttt 768  T

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Target: scaffold0627 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 4299 - 4263
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||| ||||||||||||||||||||||||||    
T  4299 taggatacacacactagtttttattaaggtgtgtttt 4263  T

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Target: scaffold0418 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 5356 - 5388
Alignment:
Q  216 atacacccactagtttttattaaggtgtgtttt 248  Q
    |||||||||||||||||||||||||||||||||    
T  5356 atacacccactagtttttattaaggtgtgtttt 5388  T

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Target: scaffold0217 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 20575 - 20611
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||||||| |||||||||||||||||||||||    
T  20575 taggatacacccagtagtttttattaaggtgtgtttt 20611  T

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Target: scaffold0015 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 9688 - 9724
Alignment:
Q  212 taggatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||||| |||||||||||||||||||||||||||    
T  9688 taggatacatccactagtttttattaaggtgtgtttt 9724  T

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Target: scaffold1717 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1717
Description:

Target: scaffold1717; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 1339 - 1372
Alignment:
Q  215 gatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||| ||||||||||||||||||||||||||    
T  1339 gatacactcactagtttttattaaggtgtgtttt 1372  T

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Target: scaffold1527 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1527
Description:

Target: scaffold1527; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 1585 - 1618
Alignment:
Q  215 gatacacccactagtttttattaaggtgtgtttt 248  Q
    ||||||| ||||||||||||||||||||||||||    
T  1585 gatacactcactagtttttattaaggtgtgtttt 1618  T

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