View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20594_low_33 (Length: 254)
Name: NF20594_low_33
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 2213646 - 2213424
Alignment:
| Q |
14 |
gaagctagtaaaaggaatactataacaaggcgaccagggatgtccactaacagcactgcgaaagcacaagagcaataaataatagaagcagaacactgta |
113 |
Q |
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| T |
2213646 |
gaagctagtaaaaggaatactataacaaggcgaccagggatgtccactaacagcactgcgaaagcacaagagcaataaataatagaagcagaacactgta |
2213547 |
T |
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| Q |
114 |
gaaagtagacattcaaaagatgaaacagagtttcactcaagaaacaacttattgccctttatattcaacaaggactactgacagacaataaaaaccaaaa |
213 |
Q |
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| T |
2213546 |
gaaagtagacattcaaaagatgaaacagagtttcaatcaagaaacaacttattgccctttatattcaacaaggactactgacagacaataaaaaccaaaa |
2213447 |
T |
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| Q |
214 |
gaaaacataggagacaaagaaat |
236 |
Q |
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||||||||||||||||||||||| |
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| T |
2213446 |
gaaaacataggagacaaagaaat |
2213424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 82 - 236
Target Start/End: Complemental strand, 2200932 - 2200773
Alignment:
| Q |
82 |
agagcaataaataatagaagcagaacactgtagaaagtagacattcaaaagatgaaacagagtttcactcaagaa-----acaacttattgccctttata |
176 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||| |
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| T |
2200932 |
agagcaataaatcatagaagcagaacaccgtagaaagtagacattcaaaagatgaaacagagtttcaatccagaaagaacacaacttattgccctttata |
2200833 |
T |
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| Q |
177 |
ttcaacaaggactactgacagacaataaaaaccaaaagaaaacataggagacaaagaaat |
236 |
Q |
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||||||||||||||||||||||||| || ||||||| ||||||| || ||||| |||||| |
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| T |
2200832 |
ttcaacaaggactactgacagacaagaacaaccaaaggaaaacacagaagacatagaaat |
2200773 |
T |
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