View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20594_low_37 (Length: 243)
Name: NF20594_low_37
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 24 - 227
Target Start/End: Complemental strand, 30521231 - 30521028
Alignment:
| Q |
24 |
gtgaagtgaacaattttgagatgtttattgagcaaccatataatgttaaaagaaacgtcacataatacacaacaggaattaatttatgcttcatgttgtg |
123 |
Q |
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| T |
30521231 |
gtgaagtgaataattttgagatgtttattgagcaaccatataattttaaaagaaacgtcacataatacacaacatgaattaatttatgcttcatgttgtg |
30521132 |
T |
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| Q |
124 |
ggtaactattttgtgattcaggtcacacgagtggttgtaattatatatttatacaagtggttgtactatatttcaacnnnnnnngtatttgtatgttaat |
223 |
Q |
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| T |
30521131 |
ggtcactatttcgtgattcaggtcacacgagtggttgtaattatatatttatacaagtggttgtactatatttcaacaaaaaaagtagttgtatgttaat |
30521032 |
T |
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| Q |
224 |
aatt |
227 |
Q |
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|||| |
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| T |
30521031 |
aatt |
30521028 |
T |
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