View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20594_low_38 (Length: 239)
Name: NF20594_low_38
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 5788352 - 5788562
Alignment:
| Q |
19 |
ccaccaacaccggtgccggtgagttcaccaccgacagcttctacacctgcagtaacaccaagcgctgaggttcccgctgcagctccaagcaaatcaaaga |
118 |
Q |
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| T |
5788352 |
ccaccaacaccggtgccagtgagttcaccaccgacagcttctacacctgcagtaacaccaagcgctgaggttcccgctgcagctccaagcaaatcaaaga |
5788451 |
T |
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| Q |
119 |
agaaaacaaagaaaggtaagaaacacagtgcaccagcaccttcaccggcattggaaggacctcctgcacctccggctggtgctcctggacctagtctcga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5788452 |
agaaaacaaagaaaggtaagaaacacagtgcaccagcaccttcaccggcattggaaggacctcctgcacctccggttggtgctcctggacctagtctcga |
5788551 |
T |
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| Q |
219 |
tgcttcttctc |
229 |
Q |
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||||||||||| |
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| T |
5788552 |
tgcttcttctc |
5788562 |
T |
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