View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20594_low_39 (Length: 236)
Name: NF20594_low_39
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_low_39 |
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| [»] scaffold1163 (1 HSPs) |
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| [»] scaffold0043 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27387370 - 27387149
Alignment:
| Q |
1 |
cttgctatatccaactcatttcgtaacattaagtacatcnnnnnnncctttcaagtttcaatgatagaatttccctttaaatataatatatattgggtta |
100 |
Q |
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| T |
27387370 |
cttgctatatccaactcatttcgtaacattaagtacatcaaaaaaacctttcaagtttcaatgatagaatttccctttaaatataatatatattgggtta |
27387271 |
T |
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| Q |
101 |
ctcagtttttcaagacttatttcaatgcatgaaatgctaaaatatattggtacaggggaatatattgtaccatgctgtgaaattttaaaatgaataattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27387270 |
ctcagtttttcaagacttatttcaatgcatgaaatgctaaaatatattggtacaggggaatatattgtaccatgctgtgaaattttaaaatgaataattt |
27387171 |
T |
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| Q |
201 |
acctgtctcccttgttattatt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
27387170 |
acctgtctcccttgttattatt |
27387149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1163 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold1163
Description:
Target: scaffold1163; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 1486 - 1681
Alignment:
| Q |
1 |
cttgctatatccaa-ctcatttcgtaacattaagtacatcnnnnnnncctttcaagtttcaatgatagaatttccctttaaatataatatatattgggtt |
99 |
Q |
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|||||||||||||| |||||||||||||||| ||||||| |||||||| || ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1486 |
cttgctatatccaagctcatttcgtaacattcagtacat-aaaaaaacctttcaatttccaatgatagaattcccctttaaatataatatatattgggtt |
1584 |
T |
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| Q |
100 |
actcagtttttcaagacttatttcaatgcatgaaatgctaaaatatattggtacaggggaatatattgtaccatgctgtgaaattttaaaatgaata |
196 |
Q |
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| T |
1585 |
actcagtttttcaagacttatttcaatgcatgaaatgctaatatatattggtacaggggaatatattgtaccatgttgtgaaattttaaaatgaata |
1681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 3 - 199
Target Start/End: Original strand, 29549 - 29745
Alignment:
| Q |
3 |
tgctatatccaa-ctcatttcgtaacattaagtacatcnnnnnnncctttcaagtttcaatgatagaatttccctttaaatataatatatattgggttac |
101 |
Q |
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|||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||| |||||| |
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| T |
29549 |
tgctatatccaagctcatttcctaacattaagtacatcaaaaaa-cctttcaagtttcaatgatagaattctccttgaaatataatatatatttggttac |
29647 |
T |
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| Q |
102 |
tcagtttttcaagacttatttcaatgcatgaaatgctaaaatatattggtacaggggaatatattgtaccatgctgtgaaattttaaaatgaataatt |
199 |
Q |
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| T |
29648 |
tcagtttttcaagacttatttcaatgcatgaaatgctaatatatattggtaccggggaatatattataccatgctgtgaaattttaaaatgattaatt |
29745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 3 - 199
Target Start/End: Original strand, 44407 - 44603
Alignment:
| Q |
3 |
tgctatatccaa-ctcatttcgtaacattaagtacatcnnnnnnncctttcaagtttcaatgatagaatttccctttaaatataatatatattgggttac |
101 |
Q |
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|||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| | || |||||||||||||||| |||||| |
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| T |
44407 |
tgctatatccaagctcatttcctaacattaagtacatcaaaaaa-cctttcaagtttcaatgatagaattctcattgaaatataatatatatttggttac |
44505 |
T |
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| Q |
102 |
tcagtttttcaagacttatttcaatgcatgaaatgctaaaatatattggtacaggggaatatattgtaccatgctgtgaaattttaaaatgaataatt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
44506 |
tcagtttttcaagacttatttcaatgcatgaaatgctaatatatattggtaccggggaatatattataccatgctgtgaaattttaaaatgattaatt |
44603 |
T |
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