View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20594_low_4 (Length: 607)
Name: NF20594_low_4
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 29 - 588
Target Start/End: Complemental strand, 31590660 - 31590104
Alignment:
| Q |
29 |
gcacacactgacacagacaagttgacactagtnnnnnnntttaaaaataaattaattgaacgtaatcacatgttttggcatcatgtctacgtgtcagaca |
128 |
Q |
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| T |
31590660 |
gcacacaatgacacggacaagttgacaccagtaaaaaaatttaaaaataaattaattgaacttaatcacatgtttcagcatcatgtctacgtgtcagaca |
31590561 |
T |
|
| Q |
129 |
cctttttgtttttaagctgacacaccttatacaccttcaatcagaagtgtcagtgctacatagcagcagtagcacataactaaatacacaaaaatcatag |
228 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
31590560 |
cctttttctttttaagctgacacaccttacacaccttcaatcagaagtgtcagtgctacatagcag---tagcacataactgaatacacaaaaatcatag |
31590464 |
T |
|
| Q |
229 |
taatccacaatcaaaacaatgatcaagcacatattcaacactctaactaaaattatacacaatccgcatcaagtttcatcaacttaaacccttaatcagg |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31590463 |
taatccacaatcaaaacaatgatcaagcacatattcaacactctaactaaaattatacacaatccgcatcaagtttcatcaacttaaacccttaatcagg |
31590364 |
T |
|
| Q |
329 |
tctagatactcattctaatgcttcaatggagcgtttaacaattcgaattaatggaaattgttgaatttcatatgaacttaggaaacaacgaagattttgt |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31590363 |
tctagatactcattctaatgcttcaatggagcgtttaacaattcgaattaatggaaattgttgaatttcatatgaacttaggaaacaacgaagattctgt |
31590264 |
T |
|
| Q |
429 |
gagatctacagtaccgaaaacgatgttggcggcagtgacagcgtcgtcgaagaggcgacgagggatggttgtggagagcttgagcgcggttgcaggatcg |
528 |
Q |
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| T |
31590263 |
gagatctacagtaccgaaaacgatgttggcggcagtgacggcgtcgtcgaagaggcgacgggggatggttgtggagagcttgagcgcggttgcaggatcg |
31590164 |
T |
|
| Q |
529 |
tcggaggtggcaatgagcgccgctgcactgccgccgccgatggcggttgctagtacagat |
588 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31590163 |
tcagaggtggcaatgagcgccgctgcactgccgccgccgatggcggttgctagtagagat |
31590104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 5243304 - 5243337
Alignment:
| Q |
159 |
acaccttcaatcagaagtgtcagtgctacatagc |
192 |
Q |
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| T |
5243304 |
acaccttcaatcagaagtgtcggtgctacatagc |
5243337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 35871221 - 35871177
Alignment:
| Q |
71 |
aaaaataaattaattgaacgtaatcacatgttttggcatcatgtc |
115 |
Q |
| |
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||||||||| |||||||| |||||||||||| |||| |||||||| |
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| T |
35871221 |
aaaaataaagtaattgaatgtaatcacatgtgttggtatcatgtc |
35871177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 35053715 - 35053683
Alignment:
| Q |
159 |
acaccttcaatcagaagtgtcagtgctacatag |
191 |
Q |
| |
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||||||||||||||||||||| ||||||||||| |
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| T |
35053715 |
acaccttcaatcagaagtgtcggtgctacatag |
35053683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 35070032 - 35070000
Alignment:
| Q |
159 |
acaccttcaatcagaagtgtcagtgctacatag |
191 |
Q |
| |
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||||||||||||||||||||| ||||||||||| |
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| T |
35070032 |
acaccttcaatcagaagtgtcggtgctacatag |
35070000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 24445422 - 24445378
Alignment:
| Q |
71 |
aaaaataaattaattgaacgtaatcacatgttttggcatcatgtc |
115 |
Q |
| |
|
||||||||| |||||||| |||||||||||| |||| |||||||| |
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| T |
24445422 |
aaaaataaagtaattgaatgtaatcacatgtgttggtatcatgtc |
24445378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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