View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20594_low_41 (Length: 234)

Name: NF20594_low_41
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20594_low_41
NF20594_low_41
[»] chr2 (2 HSPs)
chr2 (17-230)||(5793756-5793969)
chr2 (17-230)||(5780263-5780475)
[»] scaffold0159 (1 HSPs)
scaffold0159 (17-230)||(25595-25807)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 5793969 - 5793756
Alignment:
Q  17 attaaggagttgtaataagatcatcatcaattgtaaaatcttcccagttccatcctcgttaaccagatcagatcagtataagcctgtgattgctaactga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5793969 attaaggagttgtaataagatcatcatcaattgtaaaatcttcccagttccatcctcgttaaccagatcagatcagtataagcctgtgattgctaactga 5793870  T
Q  117 aagcaacaagttgggactggctagtcaataccgatcgacaatccagagttatacaaccccattagtattaccactagcatcagaaaacaaaaatcattgt 216  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||    
T  5793869 aagcaacaagttgggactggctagtcaacaccaatcgacaatccagagttatacaaccccattagtattaccactagcatcagaaaaccaagatcgttgt 5793770  T
Q  217 gaatcgaatttcca 230  Q
    || |||| ||||||    
T  5793769 gactcgactttcca 5793756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 5780475 - 5780263
Alignment:
Q  17 attaaggagttgtaataagatcatcatcaattgtaaaatcttcccagttccatcctcgttaaccagatcagatcagtataagcctgtgattgctaactga 116  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5780475 attaaggagttgtaataagatcatcatcaattgtaaaatctttccagttccatcctcattaaccagatcagatcagtataagcctgtgattgctaactga 5780376  T
Q  117 aagcaacaagttgggactggctagtcaataccgatcgacaatccagagttatacaaccccattagtattaccactagcatcagaaaacaaaaatcattgt 216  Q
    |||||||||||||||||||||||||||| ||| ||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| || ||| ||||    
T  5780375 aagcaacaagttgggactggctagtcaacaccaatcga-aatcgagagttatacaaccccgttagtattaccactagcatcagaaaaccaagatcgttgt 5780277  T
Q  217 gaatcgaatttcca 230  Q
    || |||| ||||||    
T  5780276 gactcgactttcca 5780263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 25807 - 25595
Alignment:
Q  17 attaaggagttgtaataagatcatcatcaattgtaaaatcttcccagttccatcctcgttaaccagatcagatcagtataagcctgtgattgctaactga 116  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25807 attaaggagttgtaataagatcatcatcaattgtaaaatctttccagttccatcctcattaaccagatcagatcagtataagcctgtgattgctaactga 25708  T
Q  117 aagcaacaagttgggactggctagtcaataccgatcgacaatccagagttatacaaccccattagtattaccactagcatcagaaaacaaaaatcattgt 216  Q
    |||||||||||||||||||||||||||| ||| ||||| |||| |||||||||||||||| ||||||||||||||||||||||||||| || ||| ||||    
T  25707 aagcaacaagttgggactggctagtcaacaccaatcga-aatcgagagttatacaaccccgttagtattaccactagcatcagaaaaccaagatcgttgt 25609  T
Q  217 gaatcgaatttcca 230  Q
    || |||| ||||||    
T  25608 gactcgactttcca 25595  T

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