View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20594_low_45 (Length: 214)
Name: NF20594_low_45
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 42936108 - 42935931
Alignment:
| Q |
16 |
tgaagtgtgaagggtaaatgcaaatgaagttcttagaacaacgcacgtatatatagagagcatgtagtgcaatgcatatattcatgggaaatagggtgga |
115 |
Q |
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| T |
42936108 |
tgaagtgtgaagggcaaatgcaaatgaagttcttagaacaacgcgcgtatatatagagaacatgtagtgcaatgcatatattcatgggaaatagggtgga |
42936009 |
T |
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| Q |
116 |
tattaatttacatggaagatataagagatatgttggaaatagatagtggagtggaaatagataggtagtaaatgccatacatg |
198 |
Q |
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| T |
42936008 |
tattaatttacatggaagatataagagatatgttggaaatagatagtggagtgggaat-----ggtagtaaatgccatacatg |
42935931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 26084363 - 26084280
Alignment:
| Q |
86 |
aatgcatatattcatgggaaatagggtggatattaatttacatggaagatataagagatatgttggaaatagatagtggagtgg |
169 |
Q |
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| T |
26084363 |
aatgcatatattcatgggaaataggatggatattaatttacatggaagatataagagatatgttgggaatagatagtggagtgg |
26084280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 9045662 - 9045485
Alignment:
| Q |
16 |
tgaagtgtgaagggtaaatgcaaatgaagttcttagaacaacgcacgtatatatagagagcatgtagtgcaatgcatatattcatgggaaatagggtgga |
115 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||| |
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| T |
9045662 |
tgaagtgtgaagggtaaaggcaaatgaagttcttagaacaacacacgtatgtatagagaacatgtagtgcactgcatatattcatggaaaatagggtgga |
9045563 |
T |
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| Q |
116 |
tattaatttacatggaagatataagagatatgttggaaatagatagtggagtggaaatagataggtagtaaatgccatacatg |
198 |
Q |
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| T |
9045562 |
tattaatttacatggaagatataagagatatgttgggaatagatagtggagtgggaat-----ggtagtaaatgccatacatg |
9045485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 21762574 - 21762423
Alignment:
| Q |
16 |
tgaagtgtgaagggtaaatgcaaatgaagttcttagaacaacgcacgtatatatagagagcatgtagtgcaatgcatatattcatgggaaatagggtgga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| | ||||||||| |||||| |
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| T |
21762574 |
tgaagtgtgaagggtaaatgcaaatgaagttcttagcacaacacacgtatatatagagaacatgtagtgcaatgcatatatgcctgggaaataaggtgga |
21762475 |
T |
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| Q |
116 |
tattaatttacatggaagatataagagatatgttggaaatagatagtggagt |
167 |
Q |
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| T |
21762474 |
tactaatttacatggaagatataagagatatgttgggaatagatagtggagt |
21762423 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 24258255 - 24258100
Alignment:
| Q |
16 |
tgaagtgtgaagggtaaatgcaaatgaagttcttagaacaacgcacgtatatatagagagca--tgtagtgcaatgcatatattcatgggaaatagggtg |
113 |
Q |
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||||||||||||| |||||||||||||||||||| ||||| ||| |||||| |||||| | ||||||||| ||||||||| |||||||||||||||| |
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| T |
24258255 |
tgaagtgtgaaggaaaaatgcaaatgaagttcttaacacaacacacatatatagagagagaaaatgtagtgcagtgcatatatgcatgggaaatagggtg |
24258156 |
T |
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| Q |
114 |
gatattaatttacatggaagatataagagatatgttggaaatagatagtggagtgg |
169 |
Q |
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||||||||||||||| |||||||||||||| ||||||| |||| ||| ||| |||| |
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| T |
24258155 |
gatattaatttacatagaagatataagagagatgttgggaatatataatggggtgg |
24258100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 30061847 - 30061789
Alignment:
| Q |
63 |
tatatatagagagcatgtagtgcaatgcatatattcatgggaaatagggtggatattaa |
121 |
Q |
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|||| |||| || ||||||||| |||| |||||||||||||||||||||||| |||||| |
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| T |
30061847 |
tatacatagtgaacatgtagtgtaatgtatatattcatgggaaatagggtgggtattaa |
30061789 |
T |
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