View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20594_low_6 (Length: 594)
Name: NF20594_low_6
Description: NF20594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20594_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 292 - 579
Target Start/End: Original strand, 10386817 - 10387105
Alignment:
| Q |
292 |
actaataattatcaatcaattagtagagaatggaaaccttttgtatcaaattcagtaaatgacatataaaaatatttctttacgaattgatatgaattga |
391 |
Q |
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| T |
10386817 |
actaataattatcaatcaattagtagagaatggaaaccttttgtatcaaattcagtaaatgacatataaaaatatttctttacgaattgatatgaattaa |
10386916 |
T |
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| Q |
392 |
atctagttttttaataaaaatagaaaatttggatttgatttatatatacttttagtgtaaagaattttacaatgtcaatcaattataccatgattaagaa |
491 |
Q |
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| T |
10386917 |
atctagttttttaataaaaatagaaaatttggatttgatttatatatacttttagtgtaaagaattttacaatgtcaatcaattataccatgattaagaa |
10387016 |
T |
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| Q |
492 |
taattgata-tttttaataaaataatatagtggtgagattcatacacttgaagggtagagaagtagaaaattcagagtttgaacccttc |
579 |
Q |
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| T |
10387017 |
taattgatattttttaatcacataatctagtggtgagattcacacacttgaagtgtacagaaatagaaaattcaaagtttaaacccttc |
10387105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 10386549 - 10386747
Alignment:
| Q |
18 |
gtgatttcgaaggaagcacatcagcatgatcaagaaagctgtgagaggaaaaacatagacaccgtttcccaatcccaaaagtctcattcttctcattgca |
117 |
Q |
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| T |
10386549 |
gtgatttcgaaggaagcacatcagcatgatcaagaaagctgtgagaggaaaaacatagacaccatttcccaatcccaaaagtctcattattctcattgca |
10386648 |
T |
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| Q |
118 |
aagaataatttgattttgaaaaagagctcaatgtgttgagagaaaaaatagtcttttacattaaagctaaaatcaatgagattttattaaagcagaaata |
217 |
Q |
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| T |
10386649 |
aacaataatttgattttgaaaaagagctcaatgtgttgaga-aaaaaatagtcttttacattaaagctaaaatcaatgagattttattaaagcagaaata |
10386747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 10382752 - 10382853
Alignment:
| Q |
25 |
cgaaggaagcacatcagcatgatcaagaaagctgtgagaggaaaaacatagacaccgtttcccaatcccaaaagtctcattcttctcattgcaaagaata |
124 |
Q |
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|||||||||||||| | || |||||||||||||||||||||| |||||| ||| ||||| |||||||||| |||||||||||||||||||||| |||| |
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| T |
10382752 |
cgaaggaagcacatgaacacaatcaagaaagctgtgagaggaagaacatatacaaagtttctcaatcccaaaggtctcattcttctcattgcaaataata |
10382851 |
T |
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| Q |
125 |
at |
126 |
Q |
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|| |
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| T |
10382852 |
at |
10382853 |
T |
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