View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20595_high_3 (Length: 372)
Name: NF20595_high_3
Description: NF20595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20595_high_3 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 77 - 353
Target Start/End: Original strand, 26651614 - 26651890
Alignment:
| Q |
77 |
gaacctcctaagaggccaaaatccactttcaccgaatgaactaaaaaccaaagaccaaagaccaaaatccactacccatactttccatattttaagttgt |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26651614 |
gaacctcctaagaggccaaaatccactttcaccgaatgaactaaaaaccaaagaccaaagaccaaaatccactacccatactttccatattttaagttat |
26651713 |
T |
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| Q |
177 |
tacaatatataatcacagaaaatattagaagctgtaaattaatattcagatgatcaacttcaaaaaccttagcacatatttgacattgaacgaaactgat |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
26651714 |
tacaatatataatcacagaaaatattagaagctgtaaattaatattcagatgatcaacttcaaaaaccttggcacatatttgacattgaacgaaactggt |
26651813 |
T |
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| Q |
277 |
ttgcaactcttattagtagtgagacaggaaatggtgaaaccactttactttggaatgaattatggaagggtaccaac |
353 |
Q |
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| T |
26651814 |
tagcaactcttgttagtagtgagataggaaatggtgaaaccactttactttcgaatgaattatggaagggtaccaac |
26651890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 77 - 353
Target Start/End: Original strand, 26757582 - 26757858
Alignment:
| Q |
77 |
gaacctcctaagaggccaaaatccactttcaccgaatgaactaaaaaccaaagaccaaagaccaaaatccactacccatactttccatattttaagttgt |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26757582 |
gaacctcctaagaggccaaaatccactttcaccgaatgaactaaaaaccaaagaccaaagaccaaaatccactacccatactttccatattttaagttat |
26757681 |
T |
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| Q |
177 |
tacaatatataatcacagaaaatattagaagctgtaaattaatattcagatgatcaacttcaaaaaccttagcacatatttgacattgaacgaaactgat |
276 |
Q |
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| T |
26757682 |
tacaatatataatcacagaaaatattagaagctgtaaattaatattcagatgatcaacttcaaaaaccttggcacatatttgacattgaacgaaactggt |
26757781 |
T |
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| Q |
277 |
ttgcaactcttattagtagtgagacaggaaatggtgaaaccactttactttggaatgaattatggaagggtaccaac |
353 |
Q |
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| T |
26757782 |
tagcaactcttgttagtagtgagataggaaatggtgaaaccactttactttcgaatgaattatggaagggtaccaac |
26757858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 148 - 260
Target Start/End: Complemental strand, 27421882 - 27421770
Alignment:
| Q |
148 |
ctacccatactttccatattttaagttgttacaatatataatcacagaaaatattagaagctgtaaattaatattcagatgatcaacttcaaaaacctta |
247 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| | ||| | |||||||| |||||||||||||||||||||| |
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| T |
27421882 |
ctacccatactttccatattctaagtaattacaatatataatcacagaaattattagaagatataattgaatattcatatgatcaacttcaaaaacctta |
27421783 |
T |
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| Q |
248 |
gcacatatttgac |
260 |
Q |
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||||||||||||| |
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| T |
27421782 |
gcacatatttgac |
27421770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 256 - 344
Target Start/End: Complemental strand, 27421712 - 27421623
Alignment:
| Q |
256 |
ttgacattgaacgaaactgatttgcaactcttattagtagtgagacaggaaatggtg-aaaccactttactttggaatgaattatggaag |
344 |
Q |
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|||||||||||| |||||| |||||||||||| |||| |||| || ||||||||||| ||||||| |||||||| |||||||| |||||| |
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| T |
27421712 |
ttgacattgaaccaaactggtttgcaactcttcttagaagtgcgataggaaatggtgaaaaccacattactttgcaatgaattgtggaag |
27421623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 148 - 260
Target Start/End: Original strand, 65481 - 65593
Alignment:
| Q |
148 |
ctacccatactttccatattttaagttgttacaatatataatcacagaaaatattagaagctgtaaattaatattcagatgatcaacttcaaaaacctta |
247 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| | ||| | |||||||| |||||||||||||||||||||| |
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| T |
65481 |
ctacccatactttccatattctaagtaattacaatatataatcacagaaattattagaagatataattgaatattcatatgatcaacttcaaaaacctta |
65580 |
T |
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| Q |
248 |
gcacatatttgac |
260 |
Q |
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||||||||||||| |
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| T |
65581 |
gcacatatttgac |
65593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 256 - 344
Target Start/End: Original strand, 65651 - 65740
Alignment:
| Q |
256 |
ttgacattgaacgaaactgatttgcaactcttattagtagtgagacaggaaatggtg-aaaccactttactttggaatgaattatggaag |
344 |
Q |
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|||||||||||| |||||| |||||||||||| |||| |||| || ||||||||||| ||||||| |||||||| |||||||| |||||| |
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| T |
65651 |
ttgacattgaaccaaactggtttgcaactcttcttagaagtgcgataggaaatggtgaaaaccacattactttgcaatgaattgtggaag |
65740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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