View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20595_low_1 (Length: 543)
Name: NF20595_low_1
Description: NF20595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20595_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 76 - 525
Target Start/End: Complemental strand, 41336093 - 41335644
Alignment:
| Q |
76 |
cacctctaatttcatctctaagtataagttagaggtgtaaaaattagagatcaatttaaatannnnnnnncatctctaattactgccaataattcaactt |
175 |
Q |
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| T |
41336093 |
cacctctaatttcatctctaagtataagttagaggtgtaaaaattagagatcaatttaaatattttttttcatctctaattactgccaataattcaactt |
41335994 |
T |
|
| Q |
176 |
tttctagcagtgcaaatgatgaaagttataacagacgactagccgaagaagatgcaagaccatgaaaatcattccatgaattattgtaatggttgttatt |
275 |
Q |
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| T |
41335993 |
tttctagcagtgcaaacgatgaaagttataacagacgactagccgaagaagatgcaagaccatgaaaatcattccatgaattattgtaatggttgttatt |
41335894 |
T |
|
| Q |
276 |
ctctgacatattcattggagatctaagcagattaaaacctccgttgtgttccgatttaaccgatgcaggcatcaaagtagtaaccctagaagtagttgtt |
375 |
Q |
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| T |
41335893 |
ctctgacatattcattggagatctaagaagattaaaacctccgttgtgttccgatttaaccgatgcaggcatcaaagtagtaaccctagaagtagttgtt |
41335794 |
T |
|
| Q |
376 |
ggttcaacaatttcactttgaaatgggaaagaaacatttgaagtacttgaatcaaagccattattcatgaaaggaaactgctgaaatctccactgatcga |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41335793 |
ggttcaacaatttcactttgaaatgggaaagaaacatttgaagtacttgaatcaaagccattattcatgaaaggaaactgctgaaatctccactgatcga |
41335694 |
T |
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| Q |
476 |
caactcctccttctcctccaccagtagttgaactataatcaccaatttga |
525 |
Q |
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| T |
41335693 |
caactcctccttctcctccaccagtagttgaactataatcaccaatttga |
41335644 |
T |
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