View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20595_low_11 (Length: 218)
Name: NF20595_low_11
Description: NF20595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20595_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 35025527 - 35025342
Alignment:
| Q |
18 |
gatagagggaaggaagatcaaactaggccaagcataggttattttcagaacaactagattcgctacgctgacaaatttttaagaccgaatcttaccattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35025527 |
gatagagggaaggaagatcaaactaggccaagcataggttattttcagaacaactagattcgctacgctggcaaatttttaagaccgaatcttaccattt |
35025428 |
T |
|
| Q |
118 |
cccattagtttaattacaagtccatcacaatattgcaccttatcactccttagcttaaacaagttcttattat-aaagccaataac |
202 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
35025427 |
cccattagtttaattacaagtccatcacaatattgcatcttatcactcattagcttaaacaagttcttattataaaagccaataac |
35025342 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 37851889 - 37851714
Alignment:
| Q |
18 |
gatagagggaaggaagatcaaactaggccaagcataggttattttcagaacaactagattcgctacgctgacaaatttttaagaccgaatcttaccattt |
117 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||| || | || ||||| | || |||||||||||||| |
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| T |
37851889 |
gatagagggacggaagatcaaactagaccaagcataggttatttttggaacaactagattcgctatgccaaaaacttttttatactgaatcttaccattt |
37851790 |
T |
|
| Q |
118 |
cccattagtttaattacaagtccatcacaatattgcaccttatcactccttagcttaaacaagttcttattataaa |
193 |
Q |
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||||| |||| | |||||||||||||| ||||||||||| |||| ||| | |||||||| |||||||||||||| |
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| T |
37851789 |
cccatcagttccactacaagtccatcaccatattgcacctcatcatacctcatcttaaacaggttcttattataaa |
37851714 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 37833037 - 37832866
Alignment:
| Q |
18 |
gatagagggaaggaagatcaaactaggccaagcataggttattttcagaacaactagattcgctacgctgacaaatttttaagaccgaatcttaccattt |
117 |
Q |
| |
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||||||||||| |||| ||||| | |||||||||| |||||||| ||| || |||| ||||| ||||| |||||| |||| ||||||||| ||| |
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| T |
37833037 |
gatagagggaatgaaggtcaaatgacgccaagcataagttatttttggaagaattagagcagctaccctgaccaattttacagactcaatcttaccgttt |
37832938 |
T |
|
| Q |
118 |
cccattagtttaattacaagtccatcacaatattgcaccttatcactccttagcttaaacaagttcttatta |
189 |
Q |
| |
|
||||| ||||||||| ||||||||| | |||||| |||| ||||| ||| |||||||||||||| |||||| |
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| T |
37832937 |
cccatcagtttaattgtaagtccatcgccatattgaacctcatcacacctcagcttaaacaagttgttatta |
37832866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 37838560 - 37838385
Alignment:
| Q |
18 |
gatagagggaaggaagatcaaactaggccaagcataggttattttcagaacaactagattcgctacgctgacaaatttttaagaccgaatcttaccattt |
117 |
Q |
| |
|
|||||||||| ||||||||||| | |||||||||||||||||||| ||| |||||||||| ||||| |||| |||| || | | | ||||||||| |
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| T |
37838560 |
gatagagggacggaagatcaaaattggccaagcataggttatttttggaagaactagattcaatacgccaacaaccttttgagccagcaatttaccattt |
37838461 |
T |
|
| Q |
118 |
cccattagtttaattacaagtccatcacaatattgcaccttatcactccttagcttaaacaagttcttattataaa |
193 |
Q |
| |
|
||||| ||||||||| |||||| || |||||| || | ||||| |||||||||||||| || |||||||||| |
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| T |
37838460 |
cccatcagtttaattgaaagtcctataccatattgaacttcatcacaccttagcttaaacaggtagttattataaa |
37838385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 36867241 - 36867066
Alignment:
| Q |
18 |
gatagagggaaggaagatcaaactaggccaagcataggttattttcagaacaactagattcgctacgctgacaaatttttaagaccgaatcttaccattt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||| ||||| |||||||||||| |||| | ||||||| |||| ||||||||||||| |
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| T |
36867241 |
gatagagggaaggaagatcaaactaggccaaacatagtttatttttggaacagctagattcgctatgctggcgaatttttcagacaaaatcttaccattt |
36867142 |
T |
|
| Q |
118 |
cccattagtttaattacaagtccatcacaatattgcaccttatcactccttagcttaaacaagttcttattataaa |
193 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||| ||||||||| |
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| T |
36867141 |
cccattagtttaattacaagtccatcacaatatttcaccttatcacacctcagcttaaacaagttcgtattataaa |
36867066 |
T |
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