View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20595_low_2 (Length: 439)
Name: NF20595_low_2
Description: NF20595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20595_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 11 - 422
Target Start/End: Original strand, 50379179 - 50379590
Alignment:
| Q |
11 |
catcatcacacctgccccccacggtctcttatccgggtcacacaggttaccaccgtgaaccgccaccttaatcaaacctggaaactcaaaacttggcgat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
50379179 |
catcatcacacctgccccccacggtctcttatccgggtcacacaggttaccaccgtgaactgccaccttaatcaaacctggaaactcaaaacttggcgat |
50379278 |
T |
|
| Q |
111 |
ccatacaataaaaccctacccaagctagcaaacgttggaaaatcaccaccaattgtaaacttcccttggtgcccttccttgatcctccagtaacataggt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50379279 |
ccatacaataaaaccctacccaagctagcaaacgttggaaaatcaccaccaattgtaaacttcccttggtgcccttccttgatcctccagtaacataggt |
50379378 |
T |
|
| Q |
211 |
gagtttccaatggttgaatcggaatttcaaccccacttatcttctttactagcttgttcacccaagctcccactgtcacaacacattttttgccacggaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
50379379 |
gagtttccaatggttgaatcggaatttcaaccccacttatcttctttactagcttgttcacccaagctcctactgtcacaacacattttttgccacggaa |
50379478 |
T |
|
| Q |
311 |
tttttcacctttcgcggttaaaataacaacgctaccaccatcgttttttatgtctacaacttcaacattgtcatttaacacagcaccgtggctacgcgcc |
410 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50379479 |
tttttcacctttcgcagttaaaataacaacgctaccaccatcgttttttatgtctacaacttcaacattgtcgtttaacacagcaccgtggctacgcgcc |
50379578 |
T |
|
| Q |
411 |
agtgactgaaac |
422 |
Q |
| |
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|||||||||||| |
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| T |
50379579 |
agtgactgaaac |
50379590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 333
Target Start/End: Original strand, 50369016 - 50369338
Alignment:
| Q |
11 |
catcatcacacctgccccccacggtctcttatccgggtcacacaggttaccaccgtgaaccgccaccttaatcaaacctggaaactcaaaacttggcgat |
110 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||| |||||| || ||||| | ||||||||||| ||| |||| ||| || | | |
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| T |
50369016 |
catcatcacaactgagccccacggtctcttatccgggtcacacaaccgaccaccatggaccgcggctttaatcaaacccggatactccaaaacgggtgtt |
50369115 |
T |
|
| Q |
111 |
ccatacaataaaaccctacccaagctagcaaacgttggaaaatcaccaccaattgtaaacttcccttggtgcccttccttgatcctccagtaacataggt |
210 |
Q |
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|| || | || || |||| ||||||||||| ||||||||||||||||||||| || || |||| ||||||| || |||||||||||||| | | |
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| T |
50369116 |
ccgtatacataagccttaccaaagctagcaaaagttggaaaatcaccaccaattacgaatttaccttcatgcccttttttaatcctccagtaacaaacat |
50369215 |
T |
|
| Q |
211 |
gagtttccaatggttgaatcggaatttcaaccccacttatcttctttactagcttgttcacccaagctcccactgtcacaacacattttttgccacggaa |
310 |
Q |
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|||| |||| |||| |||||||||||||| || || || |||| |||| ||| ||| |||| ||||| || || || ||||||||||| || || || |
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| T |
50369216 |
gagtctccacgggttttatcggaatttcaactccgctaattctcttaactaacttattcgcccacgctccaacagttaccacacattttttaccgcgaaa |
50369315 |
T |
|
| Q |
311 |
tttttcacctttcgcggttaaaa |
333 |
Q |
| |
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|||||||| |||||||| |||| |
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|
| T |
50369316 |
cttttcaccattcgcggtaaaaa |
50369338 |
T |
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