View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20595_low_5 (Length: 312)
Name: NF20595_low_5
Description: NF20595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20595_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 28 - 295
Target Start/End: Complemental strand, 1493098 - 1492835
Alignment:
| Q |
28 |
tctatagtgtctgaaatattaggctcagtttggtgattgcatgcttagtatttaaatatacagaagaaacaatagaaggaaaataactacactacaagcc |
127 |
Q |
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| T |
1493098 |
tctatagtgtctgaaatattaggctcagtttggtgattgcatgcttagtatttaaatatacacaggaaacaatagaaggaaaataactacactacaagcc |
1492999 |
T |
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| Q |
128 |
aaattgctgattgaaaaagtgttgtgaactttgagaatatctgacatagcactcactgtgatggtcacattaattaatttgtgtgatgaggttgaagtgg |
227 |
Q |
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| T |
1492998 |
aaaatgctgattgaaaaagtgttgtgaactttgagaatatctgacatagcactcactgtgatggtcacatt----aatttgtgtgatgaggttgaagtgg |
1492903 |
T |
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| Q |
228 |
aagctcttgaagtgtggtgatactacttctttattaaaagtgcatattaaatttatgttatacataga |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1492902 |
aagctcttgaagtgtggtgatactacttctttattaaaagtgcatattaaatttatgttatacataga |
1492835 |
T |
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