View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20595_low_7 (Length: 267)
Name: NF20595_low_7
Description: NF20595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20595_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 1493132 - 1493388
Alignment:
| Q |
1 |
ctctcagcttcctcaccttccttgttaacctgtttcttttgcagctcataactaattgtcatgcaacaaaacttagagttgattattacagaaacacttg |
100 |
Q |
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| T |
1493132 |
ctctcagcttcctcaccttccttgttaacctgtttcttttgcagctcataactaattgtcatgcaacaaaacttagagttgattattacagaaacacttg |
1493231 |
T |
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| Q |
101 |
tccaaatgttgaatcaatagtaaaaaatgcagttgagatgaaacttcagcaaacatttgttacagcacctgctacacttaggctcttcttccatgattgt |
200 |
Q |
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| T |
1493232 |
tccaaatgttgaatcaatagtcaaaaatgcagttgagatgaaacttcagcaaacatttgttacagcacctgctacacttaggctcttcttccatgattgt |
1493331 |
T |
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| Q |
201 |
tttgttcaggtcagtgttctatgtttttggaattagcagtgtcgacgtgtatctgtg |
257 |
Q |
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| T |
1493332 |
tttgttcaggtcagtgttcaatgtttttggaattagcagtgtcgacgtgtatctgtg |
1493388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 140
Target Start/End: Original strand, 1487313 - 1487442
Alignment:
| Q |
9 |
ttcctcaccttccttgttaacctgtttcttttgcagctcataactaattgtcatgcaacaaaacttagagttgattattacagaaacacttgtccaaatg |
108 |
Q |
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| T |
1487313 |
ttcctcaccttccttgttaatctgtttctcttacagcttgtaaataattgtc--gcatcaaaacttagtgttgactattacagaaacacatgttcatatt |
1487410 |
T |
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| Q |
109 |
ttgaatcaatagtaaaaaatgcagttgagatg |
140 |
Q |
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| T |
1487411 |
ttgaatcaatggtccaaaatacagttaagatg |
1487442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 39800538 - 39800609
Alignment:
| Q |
140 |
gaaacttcagcaaacatttgttacagcacctgctacacttaggctcttcttccatgattgttttgttcaggt |
211 |
Q |
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| T |
39800538 |
gaaatttcaacaaacttttgttactgttcctgctacccttcgtctcttctttcatgattgttttgttcaggt |
39800609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 53053585 - 53053645
Alignment:
| Q |
145 |
ttcagcaaacatttgttacagcacctgctacacttaggctcttcttccatgattgttttgt |
205 |
Q |
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| T |
53053585 |
ttcaacaaacatttgtcactgctcctgccactcttagacttttcttccatgattgttttgt |
53053645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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