View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20595_low_8 (Length: 252)

Name: NF20595_low_8
Description: NF20595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20595_low_8
NF20595_low_8
[»] chr7 (14 HSPs)
chr7 (1-239)||(29577787-29578025)
chr7 (2-239)||(29581956-29582193)
chr7 (34-239)||(8537884-8538089)
chr7 (28-186)||(8609759-8609917)
chr7 (34-238)||(8545481-8545685)
chr7 (34-238)||(8570159-8570363)
chr7 (25-138)||(8559167-8559280)
chr7 (34-204)||(8576174-8576344)
chr7 (34-186)||(8581548-8581700)
chr7 (23-238)||(8382992-8383207)
chr7 (153-233)||(8659330-8659410)
chr7 (162-233)||(8667395-8667466)
chr7 (113-186)||(7877901-7877974)
chr7 (44-133)||(8601832-8601921)
[»] chr8 (1 HSPs)
chr8 (28-238)||(12528346-12528556)
[»] chr2 (2 HSPs)
chr2 (162-238)||(7542202-7542278)
chr2 (153-233)||(16657638-16657718)
[»] chr1 (1 HSPs)
chr1 (153-233)||(4678679-4678759)


Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 29578025 - 29577787
Alignment:
Q  1 aagcatcacgtagacaactccgaacaatctccttacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtc 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578025 aagcatcacgtagacaactccgaacaatctccatacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtc 29577926  T
Q  101 aataccctgacatatagcatctatgtcaattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29577925 aataccctgacatatagcatctatgtcaattgtggcctcaatgtcatatgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagct 29577826  T
Q  201 tttgggttcaaactaatgtccacattgttcttcctcttc 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29577825 tttgggttcaaactaatgtccacattgttcttcctcttc 29577787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 2 - 239
Target Start/End: Complemental strand, 29582193 - 29581956
Alignment:
Q  2 agcatcacgtagacaactccgaacaatctccttacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtca 101  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||| | ||||||| || |||||||||| || ||||||||| |||    
T  29582193 agcatcacgtagacaactcccaacaatctccatacatttttcaaagaggtcgatgttgatttgctcaaacttggcccgagtaactggtgagcagaaatca 29582094  T
Q  102 ataccctgacatatagcatctatgtcaattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagctt 201  Q
    ||||| ||||| || ||||||| ||||||||||| |||||||||| | ||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  29582093 ataccttgacaaatggcatctacgtcaattgtggtctcaatgtcaaatgaaagtgtcctctttgccctctcacaagctgttctcagcttccttaaagctt 29581994  T
Q  202 ttgggttcaaactaatgtccacattgttcttcctcttc 239  Q
    ||||||||  ||||||||||| ||||||||||||||||    
T  29581993 ttgggttcccactaatgtccaaattgttcttcctcttc 29581956  T

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Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 34 - 239
Target Start/End: Original strand, 8537884 - 8538089
Alignment:
Q  34 tacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatctatgtcaattgt 133  Q
    |||| |||||||||||||||||||||||| ||||||| || |||||||| |||||||| ||||| |||| ||||||||||||||||||||| ||||||||    
T  8537884 tacacttttcaaagaggtccatgttgagttgctcaaacttggcccgagtgattgatgaacagaaatcaacaccctgacatatagcatctatatcaattgt 8537983  T
Q  134 ggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttc 233  Q
    ||| ||| |||| || ||||| | ||| ||||||||||| || |||||||||| |||||| | ||||||||  ||   ||||||||| || ||||| |||    
T  8537984 ggcttcagtgtcgtaagaaagcgacctttttgccctctcgcatgcagttctcaacttcctcagagcttttgaatttccactaatgtcaactttgtttttc 8538083  T
Q  234 ctcttc 239  Q
    ||||||    
T  8538084 ctcttc 8538089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 28 - 186
Target Start/End: Original strand, 8609759 - 8609917
Alignment:
Q  28 tctccttacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatctatgtc 127  Q
    ||||| |||| |||||||||||||||||||| ||| ||||||| ||||| ||||| |||||||| || || |||||||||| | |||||||||| || ||    
T  8609759 tctccatacacttttcaaagaggtccatgttaagttgctcaaacttcgcacgagtgattgatgaacaaaaatcaataccctcagatatagcatcaatatc 8609858  T
Q  128 aattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctca 186  Q
    ||||||||||||  ||||| | ||||||| |||||||||||||||||||||||| ||||    
T  8609859 aattgtggcctccgtgtcaaatgaaagtgtcctctttgccctctcacaagcagtcctca 8609917  T

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Target: chr7; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 8545481 - 8545685
Alignment:
Q  34 tacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatctatgtcaattgt 133  Q
    |||| ||||||||||||||||| || | | ||||||| || |||||||| ||  |||| || ||||||||||| ||| ||| |||||||| |||||||||    
T  8545481 tacacttttcaaagaggtccatattcaattgctcaaacttggcccgagtgatgcatgaacaaaagtcaataccttgatataaagcatctaggtcaattgt 8545580  T
Q  134 ggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttc 233  Q
    ||||||| |||| || ||||||| ||| |||||| ||||||| |||||||||| | |||| || |||| |||||||  |||||| ||| |||||||||||    
T  8545581 ggcctcagtgtcgtatgaaagtgtcctttttgccttctcacaggcagttctcaacctcctcaaggcttctgggttccgactaatatcctcattgttcttc 8545680  T
Q  234 ctctt 238  Q
    |||||    
T  8545681 ctctt 8545685  T

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Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 8570159 - 8570363
Alignment:
Q  34 tacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatctatgtcaattgt 133  Q
    |||| ||||||||||||| ||| || | |  |||||| || ||||| || |||||||| | ||||||||| |||| | ||||||||||||  ||||||||    
T  8570159 tacacttttcaaagaggttcatattcatttcctcaaacttggcccgggttattgatgaactgaagtcaattcccttatatatagcatctagctcaattgt 8570258  T
Q  134 ggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttc 233  Q
    ||||||| | ||||| ||||||| ||| ||||||||||||||||| ||||| | | |||| || ||||||||||||  |||||| ||| | |||||||||    
T  8570259 ggcctcagtatcatatgaaagtgtcctttttgccctctcacaagctgttcttaacctcctcaaggcttttgggttcctactaatatcctcgttgttcttc 8570358  T
Q  234 ctctt 238  Q
     ||||    
T  8570359 ttctt 8570363  T

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Target: chr7; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 138
Target Start/End: Original strand, 8559167 - 8559280
Alignment:
Q  25 caatctccttacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatctat 124  Q
    |||||||| |||| ||||||||||| ||||| || ||| ||||||| || ||||| || |||||||| || |||||||| ||||||||||||||||||||    
T  8559167 caatctccatacacttttcaaagagatccatattcagttgctcaaacttagcccgtgtgattgatgaacacaagtcaatgccctgacatatagcatctat 8559266  T
Q  125 gtcaattgtggcct 138  Q
    ||||||||||||||    
T  8559267 gtcaattgtggcct 8559280  T

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Target: chr7; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 204
Target Start/End: Original strand, 8576174 - 8576344
Alignment:
Q  34 tacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatctatgtcaattgt 133  Q
    |||| ||||||||||||| ||| || | |  |||||| || ||||| || ||||| || |||||||||||||| | | ||||||||||||  ||||||||    
T  8576174 tacacttttcaaagaggttcatattcatttcctcaaacttggcccgggttattgaggaacagaagtcaatacctttatatatagcatctagttcaattgt 8576273  T
Q  134 ggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttg 204  Q
    ||| ||| ||||||| ||||||| ||| |||||| | |||||||||||||||| | ||||||| |||||||    
T  8576274 ggcatcagtgtcatatgaaagtgtcctttttgccttttcacaagcagttctcaacctccttaaggcttttg 8576344  T

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Target: chr7; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 34 - 186
Target Start/End: Original strand, 8581548 - 8581700
Alignment:
Q  34 tacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatctatgtcaattgt 133  Q
    |||| ||||||||||||| ||| || | | ||||||| || |||||||| ||||| ||  ||||||||||||| |||  ||||| ||||| |||||||||    
T  8581548 tacacttttcaaagaggttcatattcatttgctcaaacttggcccgagttattgacgaatagaagtcaataccttgatgtatagaatctaggtcaattgt 8581647  T
Q  134 ggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctca 186  Q
    ||||||| ||||||| ||||||| ||| || || |||||||||||||| ||||    
T  8581648 ggcctcagtgtcatatgaaagtgtccttttcgctctctcacaagcagtcctca 8581700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 8383207 - 8382992
Alignment:
Q  23 aacaatctccttacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatct 122  Q
    |||| ||||| |||| |||||||| |||||||| |||||| |||||||||| |||||||| | ||| ||    || |||||||||| | | | |||||||    
T  8383207 aacagtctccatacacttttcaaataggtccatattgagttgctcaaatttggcccgagtgactgaagaattaaaatcaataccctcatacagagcatct 8383108  T
Q  123 atgtcaattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtcca 222  Q
    |||||||| | ||||||||| ||| | ||||||| ||| ||||||||||| ||||| ||||| | | | || | ||| |||||||||  ||||||||||     
T  8383107 atgtcaatcgcggcctcaatatcaaatgaaagtgtcctttttgccctctcgcaagccgttcttaaccttctaagagcctttgggttcccactaatgtcct 8383008  T
Q  223 cattgttcttcctctt 238  Q
     ||| | |||||||||    
T  8383007 tattatgcttcctctt 8382992  T

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Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 8659330 - 8659410
Alignment:
Q  153 agtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttc 233  Q
    |||| |||||||||||||||||| |||||||||| | ||||||| | |||||||||   |||||||||||| || ||||||    
T  8659330 agtgtcctctttgccctctcacaggcagttctcaacctccttaaggattttgggttaccactaatgtccactttattcttc 8659410  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 8667395 - 8667466
Alignment:
Q  162 tttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttc 233  Q
    |||||||||||||| |||||||||| | ||||||| | ||||||||||  ||| |||||||| || ||||||    
T  8667395 tttgccctctcacaggcagttctcaacctccttaaggattttgggttctgactgatgtccactttattcttc 8667466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 7877974 - 7877901
Alignment:
Q  113 tatagcatctatgtcaattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctca 186  Q
    ||||||||||||||||||||| | |||| | ||| | || |||| ||| || ||||||||||| ||||||||||    
T  7877974 tatagcatctatgtcaattgtagtctcagtatcaaatgacagtgtccttttagccctctcacatgcagttctca 7877901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 8601832 - 8601921
Alignment:
Q  44 aaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatctatgtcaattgt 133  Q
    |||||||||||  |||||| ||||||| || |||||||| ||||||||   ||| |||||||||| | |||  | |||||||||||||||    
T  8601832 aaagaggtccacattgagttgctcaaacttggcccgagtgattgatgaatggaaatcaataccctcaaataaggaatctatgtcaattgt 8601921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 238
Target Start/End: Original strand, 12528346 - 12528556
Alignment:
Q  28 tctccttacatttttcaaagaggtccatgttgagtcgctcaaatttcgcccgagtaattgatgagcagaagtcaataccctgacatatagcatctatgtc 127  Q
    ||||| |||| ||||||||||||||||| || ||| |||| || || || ||||| |||||||||||||||||||| |||| ||||||||||||||||||    
T  12528346 tctccatacacttttcaaagaggtccatattcagttgctcgaacttggctcgagtgattgatgagcagaagtcaatgccctcacatatagcatctatgtc 12528445  T
Q  128 aattgtggcctcaatgtcatacgaaagtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattg 227  Q
    |||||| |||||  | || || ||||||| ||| || ||| |||| ||   ||||||||   ||||||  ||||||| ||||  | ||||||| || |||    
T  12528446 aattgtagcctctgtatcgtatgaaagtgtccttttcgccttctcgcagttagttctcaatctccttagggcttttgagttcccaataatgtcaactttg 12528545  T
Q  228 ttcttcctctt 238  Q
    |||||||||||    
T  12528546 ttcttcctctt 12528556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 7542202 - 7542278
Alignment:
Q  162 tttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctctt 238  Q
    ||||||||||||||||||||||||| | |||| || |||||||| |||  |||||||||||| |||||||| |||||    
T  7542202 tttgccctctcacaagcagttctcaacctcctcaaggcttttggattcccactaatgtccactttgttctttctctt 7542278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 16657718 - 16657638
Alignment:
Q  153 agtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttc 233  Q
    |||| |||||||||||||||||| |||||||||| | |||| || ||| ||| ||||  ||| |||||||| || ||||||    
T  16657718 agtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttgagttcccacttatgtccaccttattcttc 16657638  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 4678759 - 4678679
Alignment:
Q  153 agtgccctctttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttc 233  Q
    |||| ||||||||||||||| || |||||||||| | ||||||| | ||||| ||||  ||||||||||||||| ||||||    
T  4678759 agtgtcctctttgccctctcgcaggcagttctcaacctccttaagggttttgcgttcttactaatgtccacattattcttc 4678679  T

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