View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20596_high_15 (Length: 395)
Name: NF20596_high_15
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20596_high_15 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 9e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 192 - 395
Target Start/End: Original strand, 2628989 - 2629193
Alignment:
| Q |
192 |
atgtctatagacaaatttcaacccnnnnnnnnaaaggaaatctctaccctgttttccacaataattaccccaattctgtgtttcataatttgactcaata |
291 |
Q |
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| T |
2628989 |
atgtctatagacaaatttcaacccttttttttaaaggaaatctctaccctgttttccacaataattaccccaattctgtctttcataatttgactcaata |
2629088 |
T |
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| Q |
292 |
tttcttatattatgtaaccacttttatgttgcattcaattatgatattttctcaaattattattgtaca-tagttcatagatatttgtcagaactcagaa |
390 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2629089 |
tttcttatcttatgtaaccacttttatgttgcattcaattatgataatttctcaaattattattgtacattagttcatagatatttgtcagaactcagaa |
2629188 |
T |
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| Q |
391 |
ttctt |
395 |
Q |
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||||| |
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| T |
2629189 |
ttctt |
2629193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 2628833 - 2628995
Alignment:
| Q |
1 |
atcgttgattagtactaagtactttaatagtaactaatcagtgtcagaaaagaatcagaattcgaacccttgatgactctcttcctaactccttagtctc |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2628833 |
atcgttgtttagtactaagtactttaatagtaactaatcagtgtcagaaaagaatcagaattcgaacccttgatcactctcttcctaactccttagtctc |
2628932 |
T |
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| Q |
101 |
ttatcactttttgttaaacccttatcatgcttctatgacttttcttcacaaatgtcatgtcta |
163 |
Q |
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| T |
2628933 |
ttatcactttttgttaaacccttatcatgcttctatgacttttcttcacaaatgtcatgtcta |
2628995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 354
Target Start/End: Original strand, 34093967 - 34094001
Alignment:
| Q |
320 |
ttgcattcaattatgatattttctcaaattattat |
354 |
Q |
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| T |
34093967 |
ttgcattcaattatgacattttctcaaattattat |
34094001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 356
Target Start/End: Original strand, 17080902 - 17080935
Alignment:
| Q |
323 |
cattcaattatgatattttctcaaattattattg |
356 |
Q |
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| T |
17080902 |
cattcaattatgttattttctcaaattattattg |
17080935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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