View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20596_high_16 (Length: 387)

Name: NF20596_high_16
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20596_high_16
NF20596_high_16
[»] chr1 (23 HSPs)
chr1 (100-372)||(11028387-11028659)
chr1 (100-362)||(11033239-11033501)
chr1 (100-362)||(11010948-11011210)
chr1 (98-362)||(10914645-10914909)
chr1 (98-356)||(11004818-11005076)
chr1 (100-362)||(11007786-11008048)
chr1 (100-362)||(10974304-10974566)
chr1 (100-292)||(10979382-10979574)
chr1 (116-362)||(10903503-10903746)
chr1 (1-85)||(11030247-11030331)
chr1 (98-183)||(10901645-10901730)
chr1 (120-276)||(9319980-9320136)
chr1 (131-276)||(9350308-9350453)
chr1 (120-276)||(9318166-9318322)
chr1 (137-276)||(8873944-8874083)
chr1 (137-276)||(8964607-8964746)
chr1 (1-84)||(10977659-10977747)
chr1 (137-291)||(8999758-8999912)
chr1 (297-362)||(10983769-10983834)
chr1 (120-293)||(9384303-9384476)
chr1 (121-293)||(9453683-9453855)
chr1 (123-293)||(9399713-9399883)
chr1 (121-293)||(9432696-9432868)
[»] chr6 (1 HSPs)
chr6 (120-339)||(15927009-15927228)
[»] chr4 (1 HSPs)
chr4 (235-281)||(27692613-27692659)
[»] chr8 (1 HSPs)
chr8 (202-246)||(1901520-1901564)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 100 - 372
Target Start/End: Complemental strand, 11028659 - 11028387
Alignment:
Q  100 agatattgtgccgacgtttctgtagaatagttcaggggccatgtatccaatggttcctcttgccgcagttaatgtaacaatgcttttatctgtaggacaa 199  Q
    |||||||||||| || ||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||  |||||||| ||| |||||||||||    
T  11028659 agatattgtgccaacatttctatagaatagttcaggggccatgtatccaatggttcttcttgctgcagttaatgacacaatgctattacctgtaggacaa 11028560  T
Q  200 agcctagctagtccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatattatatc 299  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11028559 agtctagctagtccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatattacatc 11028460  T
Q  300 cattatgcaagtactcaatgcctcaagcaactccaagagaaatagcatgcaatttttcgcaacccaaataatt 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11028459 cattatgcaagtactcaatgcctcaagcaactccaagagaaatagcatgcaatttttcgcaacccaaataatt 11028387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 100 - 362
Target Start/End: Original strand, 11033239 - 11033501
Alignment:
Q  100 agatattgtgccgacgtttctgtagaatagttcaggggccatgtatccaatggttcctcttgccgcagttaatgtaacaatgcttttatctgtaggacaa 199  Q
    ||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  11033239 agatattgtgccgacatttcggtagaatagttcaggggccatatatccaatggttcctcttgctgcagttaatgtgacaatgcttttatctgtaggacaa 11033338  T
Q  200 agcctagctagtccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatattatatc 299  Q
    || ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||   |||    
T  11033339 agtctagctagtccaaaatcagaaacttttgggttgaaattctcatcaagaaggatgttatgaggctttatgtcaaagtgtagaattttcatatcgcatc 11033438  T
Q  300 cattatgcaagtactcaatgcctcaagcaactccaagagaaatagcatgcaatttttcgcaac 362  Q
    |||||||||||||||||||||||| ||| |||||||||||||| | || ||||| ||||||||    
T  11033439 cattatgcaagtactcaatgcctcgagccactccaagagaaattgaatacaattgttcgcaac 11033501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 100 - 362
Target Start/End: Original strand, 11010948 - 11011210
Alignment:
Q  100 agatattgtgccgacgtttctgtagaatagttcaggggccatgtatccaatggttcctcttgccgcagttaatgtaacaatgcttttatctgtaggacaa 199  Q
    |||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||    
T  11010948 agatattgtgccaacatttctgtagaatagttcaggggccatatatccaatggttcctcttgctgcagttaatgacacaatgcttttatctgtaggacaa 11011047  T
Q  200 agcctagctagtccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatattatatc 299  Q
    || ||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||    
T  11011048 agtctagctagtccaaaatcagaaacttttggattgaaattttcatcaagaagaatgttatgaggctttatatcaaagtgtagaattttcatattgcatc 11011147  T
Q  300 cattatgcaagtactcaatgcctcaagcaactccaagagaaatagcatgcaatttttcgcaac 362  Q
    ||| |||||||||||||||||| | ||| |||||||||||||| | || ||||| ||||||||    
T  11011148 catgatgcaagtactcaatgccacgagccactccaagagaaattgaatacaattgttcgcaac 11011210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 98 - 362
Target Start/End: Original strand, 10914645 - 10914909
Alignment:
Q  98 tgagatattgtgccgacgtttctgtagaatagttcaggggccatgtatccaatggttcctcttgccgcagttaatgtaacaatgcttttatctgtaggac 197  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||| ||||| |||||||||||||| ||||||||||  |||||||||||||||||||||     
T  10914645 tgagatattgtgccgacatttctatagaataattcaggggccatatatccgatggttcctcttgctgcagttaatgacacaatgcttttatctgtaggag 10914744  T
Q  198 aaagcctagctagtccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatattata 297  Q
    ||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  10914745 aaagcctggctagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatattgca 10914844  T
Q  298 tccattatgcaagtactcaatgcctcaagcaactccaagagaaatagcatgcaatttttcgcaac 362  Q
    |||||| ||||||||||||||||| | ||| |||||||||||||| | || ||||| ||||||||    
T  10914845 tccattgtgcaagtactcaatgccacgagccactccaagagaaattgaatacaattgttcgcaac 10914909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 98 - 356
Target Start/End: Complemental strand, 11005076 - 11004818
Alignment:
Q  98 tgagatattgtgccgacgtttctgtagaatagttcaggggccatgtatccaatggttcctcttgccgcagttaatgtaacaatgcttttatctgtaggac 197  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |  ||||||||||| |||||||||     
T  11005076 tgagatattgtgccgacatttctgtagaatagttcaggggccatgtatccaatggttcctcttgctgcagttaaggacacaatgcttttgtctgtaggag 11004977  T
Q  198 aaagcctagctagtccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatattata 297  Q
    ||| |||||||| ||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  11004976 aaaccctagctaatccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatattgca 11004877  T
Q  298 tccattatgcaagtactcaatgcctcaagcaactccaagagaaatagcatgcaattttt 356  Q
    |||||||||||||||  |||| |||| ||| || ||||||||||| |||| ||||||||    
T  11004876 tccattatgcaagtatgcaatacctcgagctacaccaagagaaatggcatacaattttt 11004818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 100 - 362
Target Start/End: Original strand, 11007786 - 11008048
Alignment:
Q  100 agatattgtgccgacgtttctgtagaatagttcaggggccatgtatccaatggttcctcttgccgcagttaatgtaacaatgcttttatctgtaggacaa 199  Q
    |||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||    
T  11007786 agatatcgtgccgacatttcggtagaatagttcaggggccatgtatccaatggttcctcttgctgcagttaatgacacaatgcttttatctgtaggacaa 11007885  T
Q  200 agcctagctagtccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatattatatc 299  Q
    || ||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||    
T  11007886 agtctagcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatgtcaaagtgtagaattttcatattgcatc 11007985  T
Q  300 cattatgcaagtactcaatgcctcaagcaactccaagagaaatagcatgcaatttttcgcaac 362  Q
    |||| ||||||||||||||||| | ||| |||||||| ||||| | || ||||| ||||||||    
T  11007986 cattgtgcaagtactcaatgccacgagccactccaagtgaaattgaatacaattgttcgcaac 11008048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 100 - 362
Target Start/End: Original strand, 10974304 - 10974566
Alignment:
Q  100 agatattgtgccgacgtttctgtagaatagttcaggggccatgtatccaatggttcctcttgccgcagttaatgtaacaatgcttttatctgtaggacaa 199  Q
    |||||||||||| |  ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||  ||||||||||||||||||||||||    
T  10974304 agatattgtgccaatatttctgtagaacagttcaggggccatgtatccaatcgttcctcttgcagcagttaatggcacaatgcttttatctgtaggacaa 10974403  T
Q  200 agcctagctagtccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatattatatc 299  Q
    || ||||| ||||| |||||||||||||||||||| ||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||    
T  10974404 agtctagcaagtccaaaatcagaaacttttggattgaaatattcatcaagaaggatggtatgaggctttatatcaaagtgtagaattttcatatcacatc 10974503  T
Q  300 cattatgcaagtactcaatgcctcaagcaactccaagagaaatagcatgcaatttttcgcaac 362  Q
    ||||||| ||||||||||| || | ||| || ||||||||||| |||||||||||||| ||||    
T  10974504 cattatgaaagtactcaattccacgagccaccccaagagaaatggcatgcaatttttcacaac 10974566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 100 - 292
Target Start/End: Original strand, 10979382 - 10979574
Alignment:
Q  100 agatattgtgccgacgtttctgtagaatagttcaggggccatgtatccaatggttcctcttgccgcagttaatgtaacaatgcttttatctgtaggacaa 199  Q
    |||||||||||| || |||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||  |||| |||||||||||||||||||    
T  10979382 agatattgtgccaacatttctgtagaatagttcaggagccatgtatccaatggtccctcttgctgcagttaatgacacaaagcttttatctgtaggacaa 10979481  T
Q  200 agcctagctagtccgaaatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcata 292  Q
    || ||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10979482 agtctagcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcata 10979574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 116 - 362
Target Start/End: Original strand, 10903503 - 10903746
Alignment:
Q  116 tttctgtagaatagttcaggggccatgtatccaatggttcctcttgccgcagttaatgtaacaatgcttttatctgtaggacaaagcctagctagtccga 215  Q
    ||||||||||| |||||||||||    |||||||||||||||||||| ||||||||||  ||||||||||||||||||||| |||| || || ||||| |    
T  10903503 tttctgtagaaaagttcaggggca---tatccaatggttcctcttgctgcagttaatgacacaatgcttttatctgtaggagaaagtctggcaagtccaa 10903599  T
Q  216 aatcagaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatattatatccattatgcaagtactc 315  Q
    ||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||||||||||||| |||  |||| |||||||||||| |    
T  10903600 aatcagaaacttttggattgaaactttcatcaagaagaatgttatgaggctttatatcaaagtgtagaattttcacattgcatccgttatgcaagtacgc 10903699  T
Q  316 aatgcctcaagcaactccaagagaaatagcatgcaatttttcgcaac 362  Q
    |||||||| ||| ||| ||| |||||| |||| ||| ||||| ||||    
T  10903700 aatgcctcgagccacttcaacagaaatggcatacaacttttcacaac 10903746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 11030331 - 11030247
Alignment:
Q  1 agtgagaaacacttcttatatttaaagcaaactcataagacgatacatttcaaatgtataagaagtttaattaattttgtatggg 85  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  11030331 agtgaggaacacttcttatatttaaagcaaactcataagacgttacatttcaaatgtataagaagtttaattaattatgtatggg 11030247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 10901645 - 10901730
Alignment:
Q  98 tgagatattgtgccgacgtttctgtagaatagttcaggggccatgtatccaatggttcctcttgccgcagttaatgtaacaatgct 183  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| |||||||||    
T  10901645 tgagatattgtgccgacatttctgtagaataattcaggggccatgtatccaatggttcctcttgctgctgttaatgaaacaatgct 10901730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 120 - 276
Target Start/End: Original strand, 9319980 - 9320136
Alignment:
Q  120 tgtagaatagttcaggggccatgtatccaatggttcctcttgccgcagttaatgtaacaatgcttttatctgtaggacaaagcctagctagtccgaaatc 219  Q
    ||||||| | |||||| ||||| |||||||| ||||||||||| |||||||| || ||||||||  | ||  ||||| ||||| |||| || || || ||    
T  9319980 tgtagaacaattcaggagccatatatccaattgttcctcttgctgcagttaaagtgacaatgctaatctcattaggataaagcttagcaagaccaaagtc 9320079  T
Q  220 agaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaa 276  Q
     |||||||| ||  |||| ||||||||||||||||||||||| ||||| ||||||||    
T  9320080 tgaaactttggggataaagttctcatcaagaaggatgttatggggcttgatatcaaa 9320136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 131 - 276
Target Start/End: Original strand, 9350308 - 9350453
Alignment:
Q  131 tcaggggccatgtatccaatggttcctcttgccgcagttaatgtaacaatgcttttatctgtaggacaaagcctagctagtccgaaatcagaaacttttg 230  Q
    ||||| ||||| |||||||| ||||||||||| |||||||| || ||||||||  | ||  ||||| ||||| |||| || || || || |||||||| |    
T  9350308 tcaggagccatatatccaattgttcctcttgctgcagttaaagtgacaatgctaatctcattaggataaagcttagcaagaccaaagtctgaaactttgg 9350407  T
Q  231 gattaaaattctcatcaagaaggatgttatgaggctttatatcaaa 276  Q
    |  |||| ||||||||||||||||||||||| ||||| ||||||||    
T  9350408 ggataaagttctcatcaagaaggatgttatggggcttgatatcaaa 9350453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 120 - 276
Target Start/End: Complemental strand, 9318322 - 9318166
Alignment:
Q  120 tgtagaatagttcaggggccatgtatccaatggttcctcttgccgcagttaatgtaacaatgcttttatctgtaggacaaagcctagctagtccgaaatc 219  Q
    ||||||| | |||||| |||||||||||||| |||||||| || |||||||| || ||||||||  | ||  | ||| ||||| | || || || || ||    
T  9318322 tgtagaacaattcaggagccatgtatccaattgttcctctagctgcagttaaagtgacaatgctaatgtcatttggataaagctttgccagaccaaagtc 9318223  T
Q  220 agaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaa 276  Q
     |||||||| ||| |||| ||||||||||||||||||||||| ||||| ||||||||    
T  9318222 tgaaactttgggaataaagttctcatcaagaaggatgttatggggcttgatatcaaa 9318166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 276
Target Start/End: Complemental strand, 8874083 - 8873944
Alignment:
Q  137 gccatgtatccaatggttcctcttgccgcagttaatgtaacaatgcttttatctgtaggacaaagcctagctagtccgaaatcagaaacttttggattaa 236  Q
    ||||| ||||||||||| |||||||||||||| | ||| |||||||| || ||   |||| | ||| |||| | ||| || ||||| ||||| ||| |||    
T  8874083 gccatatatccaatggtacctcttgccgcagtcattgtgacaatgctattctccacaggatatagcttagccaatccaaagtcagagactttcggagtaa 8873984  T
Q  237 aattctcatcaagaaggatgttatgaggctttatatcaaa 276  Q
    | |||||||||||||||||||| |||||||| ||||||||    
T  8873983 agttctcatcaagaaggatgttgtgaggcttaatatcaaa 8873944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 276
Target Start/End: Original strand, 8964607 - 8964746
Alignment:
Q  137 gccatgtatccaatggttcctcttgccgcagttaatgtaacaatgcttttatctgtaggacaaagcctagctagtccgaaatcagaaacttttggattaa 236  Q
    ||||| ||||||||||| ||||||||||| || | ||| |||||||| || |||  |||| | ||| |||| | ||| || ||||| ||||||||  | |    
T  8964607 gccatatatccaatggtacctcttgccgctgtcattgtgacaatgctattctctacaggatatagcttagccaatccaaagtcagagacttttggggtga 8964706  T
Q  237 aattctcatcaagaaggatgttatgaggctttatatcaaa 276  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  8964707 aattctcatcaagaaggatgttgtgaggcttaatatcaaa 8964746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 10977659 - 10977747
Alignment:
Q  1 agtgagaaacacttcttatatttaaagcaaactcataagacgat----acatttcaaatgta-taagaagtttaattaattttgtatgg 84  Q
    |||||| ||||||||||||||||||||||||||||||||||| |    |||||||||||| | |||||| ||||||||| |||||||||    
T  10977659 agtgaggaacacttcttatatttaaagcaaactcataagacgttttcgacatttcaaatgcattaagaaatttaattaaatttgtatgg 10977747  T

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Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 291
Target Start/End: Original strand, 8999758 - 8999912
Alignment:
Q  137 gccatgtatccaatggttcctcttgccgcagttaatgtaacaatgcttttatctgtaggacaaagcctagctagtccgaaatcagaaacttttggattaa 236  Q
    ||||| ||||||||||| |||||||||||||| | ||| |||||||| || ||    ||| | ||| |||| | |||||| ||||| ||||||||  | |    
T  8999758 gccatatatccaatggtacctcttgccgcagtcattgtgacaatgctattctccacgggatatagcttagccaatccgaagtcagagacttttggtgtga 8999857  T
Q  237 aattctcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcat 291  Q
    | || ||||||||||||||||| |||||||| |||||||| |||| ||| |||||    
T  8999858 agttttcatcaagaaggatgttgtgaggcttgatatcaaaatgtaaaatcttcat 8999912  T

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Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 10983769 - 10983834
Alignment:
Q  297 atccattatgcaagtactcaatgcctcaagcaactccaagagaaatagcatgcaatttttcgcaac 362  Q
    ||||||||||||||||||||||||| | ||| || ||||||||||| |||||||||||||| ||||    
T  10983769 atccattatgcaagtactcaatgccacgagccaccccaagagaaatggcatgcaatttttcacaac 10983834  T

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Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 293
Target Start/End: Original strand, 9384303 - 9384476
Alignment:
Q  120 tgtagaatagttcaggggccatgtatccaatggttcctcttgccgcagttaatgtaacaatgcttttatctgtaggacaaagcctagctagtccgaaatc 219  Q
    ||||||| |||||||| |||||||| || |  |||||||||||||||||||| ||||||||||| |  |    |||| | ||| | || ||||| |||||    
T  9384303 tgtagaacagttcaggagccatgtaacccaaagttcctcttgccgcagttaaggtaacaatgctatcgttcacaggatatagctttgcaagtccaaaatc 9384402  T
Q  220 agaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatat 293  Q
     ||||| ||||||  ||| |  || || ||||| || ||||||||||| |||||||| |||||||||| |||||    
T  9384403 cgaaacctttggaacaaactcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatat 9384476  T

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Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 121 - 293
Target Start/End: Complemental strand, 9453855 - 9453683
Alignment:
Q  121 gtagaatagttcaggggccatgtatccaatggttcctcttgccgcagttaatgtaacaatgcttttatctgtaggacaaagcctagctagtccgaaatca 220  Q
    |||||| | |||||| |||||||| ||||| ||||||||||| || || || |  |||||||| || ||  ||||| ||||| | || || || |||||     
T  9453855 gtagaacaattcaggagccatgtaaccaattgttcctcttgctgctgtcaaagcgacaatgctattgtcaataggataaagctttgcaagaccaaaatct 9453756  T
Q  221 gaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatat 293  Q
    |||||||| ||  | ||||| || |||||||||||||| |||||||| |||||||| || | ||||| |||||    
T  9453755 gaaactttagggatgaaattttcgtcaagaaggatgttgtgaggcttaatatcaaaatgcaaaatttgcatat 9453683  T

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Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 293
Target Start/End: Original strand, 9399713 - 9399883
Alignment:
Q  123 agaatagttcaggggccatgtatccaatggttcctcttgccgcagttaatgtaacaatgcttttatctgtaggacaaagcctagctagtccgaaatcaga 222  Q
    |||| |||||||| |||||||| ||||| ||||||||||| ||  | || ||  |||||||||| ||  ||||| ||||| | || || || || || ||    
T  9399713 agaacagttcaggagccatgtaaccaattgttcctcttgctgccatcaaagtggcaatgcttttgtcaataggataaagctttgcaagaccaaagtccga 9399812  T
Q  223 aacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatat 293  Q
    |||||| ||  | ||||| || |||||||||||||| |||||||| |||||||| || | ||||| |||||    
T  9399813 aactttagggatgaaattttcgtcaagaaggatgttgtgaggcttaatatcaaaatgcaaaatttgcatat 9399883  T

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Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 293
Target Start/End: Complemental strand, 9432868 - 9432696
Alignment:
Q  121 gtagaatagttcaggggccatgtatccaatggttcctcttgccgcagttaatgtaacaatgcttttatctgtaggacaaagcctagctagtccgaaatca 220  Q
    |||||| | |||||| |||||||| ||||| ||||||||||| || || || ||  |||||||||| ||  ||||| ||||| | || || || || ||     
T  9432868 gtagaacaattcaggagccatgtaaccaattgttcctcttgctgccgtcaaagtggcaatgcttttgtcaataggataaagctttgcaagaccaaagtcc 9432769  T
Q  221 gaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatat 293  Q
    |||||||| ||  | ||||| || || ||||||||||| |||||||| |||||||| || | ||||| |||||    
T  9432768 gaaactttagggatgaaattttcgtccagaaggatgttgtgaggcttaatatcaaaatgcaaaatttgcatat 9432696  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 120 - 339
Target Start/End: Complemental strand, 15927228 - 15927009
Alignment:
Q  120 tgtagaatagttcaggggccatgtatccaatggttcctcttgccgcagttaatgtaacaatgcttttatctgtaggacaaagcctagctagtccgaaatc 219  Q
    ||||||||| |||||| |||||||||||||| ||||||||||| |||||||| || ||||| ||  | ||  ||||| ||||| | || || || || ||    
T  15927228 tgtagaataattcaggagccatgtatccaatcgttcctcttgctgcagttaaagtgacaatactaatctcattaggataaagctttgcaagaccaaagtc 15927129  T
Q  220 agaaacttttggattaaaattctcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatattatatccattatgcaagtactcaatg 319  Q
     |||||||| ||  |||| ||||||||||||||||||||||| ||||| || ||||| || | ||||| ||| ||| |||| | ||| |||||  | ||     
T  15927128 ggaaactttggggataaagttctcatcaagaaggatgttatggggcttgatgtcaaaatgcaaaatttgcatgttacatccttgatgtaagtaagccata 15927029  T
Q  320 cctcaagcaactccaagaga 339  Q
    || | |||||||||||||||    
T  15927028 ccacgagcaactccaagaga 15927009  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 27692613 - 27692659
Alignment:
Q  235 aaaattctcatcaagaaggatgttatgaggctttatatcaaagtgta 281  Q
    ||||||||| |||||||| ||||||||||| ||||||||||||||||    
T  27692613 aaaattctcgtcaagaagaatgttatgaggttttatatcaaagtgta 27692659  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 1901564 - 1901520
Alignment:
Q  202 cctagctagtccgaaatcagaaacttttggattaaaattctcatc 246  Q
    |||||| |||||||||||||||| |||||| |||||||| |||||    
T  1901564 cctagcgagtccgaaatcagaaagttttggcttaaaattttcatc 1901520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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