View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20596_high_18 (Length: 368)
Name: NF20596_high_18
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20596_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 18714613 - 18714282
Alignment:
| Q |
16 |
ttattcttgttggtggtgatgaggctccttgggctcattgacagaattcatacatctccaagtgcatatgggcaaatcaatggccatggtggcaaagccc |
115 |
Q |
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| T |
18714613 |
ttattcttgttggtggtgatgaggctccttgggctcattgacagaattcatacatctccaagtgcatatcggcaaatcaatggccatggtggcaaagccc |
18714514 |
T |
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| Q |
116 |
taggtcagaaagggcgacacctactacaataaccactgatctccaatctgaacatgattgattgactcaaacaggctgcagttacaacgtgacttgattt |
215 |
Q |
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| T |
18714513 |
taggtcagaaagggcgacacctactacagtaaccactgatctccaatctgaacatgattgattgactcaagcaggctgcagttacaacgtgacttgattt |
18714414 |
T |
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| Q |
216 |
gcaccaaaataatccaccgatgaattaaataatattaacacaatacactgaaaataatgaaaatgatggatggaagcaattgatgatgcccaccaaccga |
315 |
Q |
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| T |
18714413 |
gcaccaaaataatccaccgatgaattaaataatattaacacaatacactgaaaataatgaaaatgatggatggaagcaattgatgatgcccaccaaccga |
18714314 |
T |
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| Q |
316 |
attgcaagatgcaaatgttgatcagtggaaac |
347 |
Q |
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| T |
18714313 |
attgcaagatgcaaatgttgatcagtggaaac |
18714282 |
T |
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