View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20596_high_2 (Length: 810)

Name: NF20596_high_2
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20596_high_2
NF20596_high_2
[»] chr6 (8 HSPs)
chr6 (1-379)||(23285010-23285388)
chr6 (625-787)||(23285631-23285794)
chr6 (89-233)||(15579949-15580093)
chr6 (6-54)||(14100121-14100169)
chr6 (6-54)||(19086603-19086651)
chr6 (6-54)||(24117281-24117329)
chr6 (3-54)||(29918453-29918504)
chr6 (7-52)||(24508005-24508050)
[»] chr8 (6 HSPs)
chr8 (6-59)||(20255222-20255275)
chr8 (87-207)||(42350880-42351000)
chr8 (6-54)||(18320849-18320897)
chr8 (7-54)||(22745916-22745963)
chr8 (6-47)||(17525395-17525436)
chr8 (1-54)||(39696625-39696678)
[»] chr7 (7 HSPs)
chr7 (6-54)||(4494922-4494970)
chr7 (6-54)||(5000515-5000563)
chr7 (6-54)||(10882835-10882883)
chr7 (6-54)||(13137585-13137633)
chr7 (6-54)||(30026340-30026388)
chr7 (6-54)||(39284272-39284320)
chr7 (1-54)||(21695814-21695867)
[»] chr4 (4 HSPs)
chr4 (6-54)||(23750886-23750934)
chr4 (6-54)||(37985412-37985460)
chr4 (7-53)||(12810812-12810858)
chr4 (6-51)||(22089981-22090026)
[»] scaffold0359 (1 HSPs)
scaffold0359 (6-54)||(5301-5349)
[»] scaffold0337 (2 HSPs)
scaffold0337 (6-54)||(15114-15162)
scaffold0337 (7-52)||(1315-1360)
[»] scaffold0324 (1 HSPs)
scaffold0324 (6-54)||(10390-10438)
[»] scaffold0120 (2 HSPs)
scaffold0120 (6-54)||(36386-36434)
scaffold0120 (6-54)||(42571-42619)
[»] scaffold0113 (1 HSPs)
scaffold0113 (6-54)||(3199-3247)
[»] scaffold0065 (1 HSPs)
scaffold0065 (6-54)||(2156-2204)
[»] scaffold0026 (2 HSPs)
scaffold0026 (6-54)||(8349-8397)
scaffold0026 (6-54)||(115972-116020)
[»] scaffold0004 (3 HSPs)
scaffold0004 (6-54)||(30482-30530)
scaffold0004 (6-51)||(220687-220732)
scaffold0004 (1-54)||(377185-377238)
[»] chr5 (4 HSPs)
chr5 (6-54)||(89093-89141)
chr5 (6-54)||(12352476-12352524)
chr5 (6-54)||(23412647-23412695)
chr5 (7-54)||(21910977-21911024)
[»] chr3 (3 HSPs)
chr3 (6-54)||(38177348-38177396)
chr3 (7-54)||(25397921-25397968)
chr3 (1-54)||(22803760-22803813)
[»] chr2 (7 HSPs)
chr2 (6-54)||(10009373-10009421)
chr2 (6-54)||(18376549-18376597)
chr2 (6-54)||(22318059-22318107)
chr2 (6-54)||(22454595-22454643)
chr2 (6-54)||(24576495-24576543)
chr2 (6-54)||(38631401-38631449)
chr2 (6-54)||(40782918-40782966)
[»] chr1 (5 HSPs)
chr1 (6-54)||(23036097-23036145)
chr1 (6-54)||(26701725-26701773)
chr1 (6-54)||(32785532-32785580)
chr1 (7-54)||(12284893-12284940)
chr1 (7-54)||(22201414-22201461)
[»] scaffold0411 (1 HSPs)
scaffold0411 (6-53)||(12662-12709)
[»] scaffold0193 (1 HSPs)
scaffold0193 (5-54)||(16234-16283)
[»] scaffold0161 (1 HSPs)
scaffold0161 (9-54)||(9749-9794)


Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 23285010 - 23285388
Alignment:
Q  1 atctagttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaagagcccctgcattatagttacctttctttctttctttttatatttc 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23285010 atctaattatcatcaaaactctcaaaatgtaatattcaacacattttgttccaagagcccctgcattatagttacctttctttctttctttttatatttc 23285109  T
Q  101 tcagctagtacaattaaagagttatatttacttacttggtgtatcaacttgttatctcccaaaatgtcagatacttttggaccactttcctcattcacca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23285110 tcagctagtacaattaaagagttatatttacttacttggtgtatcaacttgttatctcccaaaatgtcagatacttttggaccactttcctcattcacca 23285209  T
Q  201 tcatctttcactcctcacttctttagatttcaatattagtaagtgtgttgtttctgcattggttgacaacctagccacgtcttgtgcttccaacttctta 300  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23285210 ccatctttcactcctcacttctttagatttcaatattagtaagtgtgttgtttctgcattggttgacaacctagccacgtcttgtgcttccaacttctta 23285309  T
Q  301 gatttttcttcagcaatggaactagctaggtagtgtgttgtttctgcattgacctttctgagtggtttttctctaattc 379  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23285310 gatttttcttgagcaatggaactagctaggtagtgtgttgtttctgcattgacctttttgagtggtttttctctaattc 23285388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 625 - 787
Target Start/End: Original strand, 23285631 - 23285794
Alignment:
Q  625 agcaaattgatcaatatgtcttattgttagattaaatgtgacttattaatctaattgtgaaggacaaatttgtgctagtgcaagacttaattccgtgttc 724  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23285631 agcaaattgatcaatatgtcttattgttagattaaatgtgacttattaatctaattgtgaaggacaaatttgtgctagtgcaagacttaattccgtgttc 23285730  T
Q  725 aaattagagaaagcatatattgaggcttattcccacctataattac-ttgtttgctagacaaag 787  Q
    | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23285731 acattagagaaagcatatattgaggcttattcccacctataattactttgtttgctagacaaag 23285794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 233
Target Start/End: Original strand, 15579949 - 15580093
Alignment:
Q  89 tttttatatttctcagctagtacaattaaagagttatatttacttacttggtgtatcaacttgttatctcccaaaatgtcagatacttttggaccacttt 188  Q
    |||||||||||||||| | | |||||||| | | |  |||||||||| |||||| |||  |||| | |||||  ||| | |||| ||||| |||||||||    
T  15579949 tttttatatttctcagttggcacaattaaggggcttaatttacttacctggtgtttcagattgtcacctccctcaatattagattcttttcgaccacttt 15580048  T
Q  189 cctcattcaccatcatctttcactcctcacttctttagatttcaa 233  Q
    |||||||||| || ||| | ||||||||||||||| || ||||||    
T  15580049 cctcattcacgattatcatgcactcctcacttcttaagttttcaa 15580093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 14100169 - 14100121
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  14100169 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 14100121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 19086603 - 19086651
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  19086603 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 19086651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 24117281 - 24117329
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    ||||||||||||||| |||||| ||||| || |||||||||||||||||    
T  24117281 gttatcatcaaaactttcaaaaggtaatgttaaacacattttgttccaa 24117329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 29918453 - 29918504
Alignment:
Q  3 ctagttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    ||||||||||||||||||||||||  || || || |||||||||||||||||    
T  29918453 ctagttatcatcaaaactctcaaagggtgatgttaaacacattttgttccaa 29918504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 24508050 - 24508005
Alignment:
Q  7 ttatcatcaaaactctcaaaatgtaatattcaacacattttgttcc 52  Q
    |||||||||||||||||||||  |||| || |||||||||||||||    
T  24508050 ttatcatcaaaactctcaaaagttaatgttaaacacattttgttcc 24508005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 20255275 - 20255222
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaagagcc 59  Q
    |||||||||||||||||||||  ||||| |||||||||||||||||||| ||||    
T  20255275 gttatcatcaaaactctcaaagggtaatgttcaacacattttgttccaacagcc 20255222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 207
Target Start/End: Original strand, 42350880 - 42351000
Alignment:
Q  87 tctttttatatttctcagctagtacaattaaagagttatatttacttacttggtgtatcaacttgttatctcccaaaatgtcagatacttttggaccact 186  Q
    ||||||||||||| |||| | | | |||||| ||||||  ||||||||  |||| | ||||||||||| |||||  |||||||| | ||||||||||| |    
T  42350880 tctttttatatttttcagttggcaaaattaaggagttaggtttacttagctggtatttcaacttgttacctccctcaatgtcagtttcttttggaccatt 42350979  T
Q  187 ttcctcattcaccatcatctt 207  Q
    || || |||||||| ||||||    
T  42350980 tttcttattcaccaccatctt 42351000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 18320897 - 18320849
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  18320897 gttatcatcaaaactctcaaagagtaatgttaaacacattttgttccaa 18320849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 22745916 - 22745963
Alignment:
Q  7 ttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    ||||||||||||||||||||  ||||| || |||||||||||||||||    
T  22745916 ttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 22745963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 17525436 - 17525395
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacatttt 47  Q
    |||||||||||||||||||||| ||||| || ||||||||||    
T  17525436 gttatcatcaaaactctcaaaaggtaatgttaaacacatttt 17525395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 39696625 - 39696678
Alignment:
Q  1 atctagttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||| |||||||||||||||||||||  ||||| || |||| ||||||||||||    
T  39696625 atcttgttatcatcaaaactctcaaagggtaatgttaaacatattttgttccaa 39696678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 4494922 - 4494970
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  |||||||| |||||||||||||||||    
T  4494922 gttatcatcaaaactctcaaagggtaatattaaacacattttgttccaa 4494970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 5000563 - 5000515
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  5000563 gttatcatcaaaactctcaaatggtaatgttaaacacattttgttccaa 5000515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 10882883 - 10882835
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  10882883 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 10882835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 13137633 - 13137585
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  13137633 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 13137585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 30026340 - 30026388
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  30026340 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 30026388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 39284320 - 39284272
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  39284320 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 39284272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 21695814 - 21695867
Alignment:
Q  1 atctagttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||| ||||||||||||||||| |||  ||||| || |||||||||||||||||    
T  21695814 atcttgttatcatcaaaactcttaaagggtaatgttaaacacattttgttccaa 21695867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 23750886 - 23750934
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  |||||||| |||||||||||||||||    
T  23750886 gttatcatcaaaactctcaaagggtaatattaaacacattttgttccaa 23750934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 37985460 - 37985412
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  37985460 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 37985412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 12810858 - 12810812
Alignment:
Q  7 ttatcatcaaaactctcaaaatgtaatattcaacacattttgttcca 53  Q
    ||||||||||||||||||||  ||||| || ||||||||||||||||    
T  12810858 ttatcatcaaaactctcaaagggtaatgttaaacacattttgttcca 12810812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 22089981 - 22090026
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttc 51  Q
    |||||||||||||||||||||  ||||| || ||||||||||||||    
T  22089981 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttc 22090026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 5349 - 5301
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  5349 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 5301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 15114 - 15162
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  15114 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 15162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 1315 - 1360
Alignment:
Q  7 ttatcatcaaaactctcaaaatgtaatattcaacacattttgttcc 52  Q
    |||||||||||||||||||||  |||| || |||||||||||||||    
T  1315 ttatcatcaaaactctcaaaagttaatgttaaacacattttgttcc 1360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0324 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0324
Description:

Target: scaffold0324; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 10390 - 10438
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  10390 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 10438  T

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Target: scaffold0120 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 36434 - 36386
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  36434 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 36386  T

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Target: scaffold0120; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 42571 - 42619
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  42571 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 42619  T

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Target: scaffold0113 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 3199 - 3247
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  3199 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 3247  T

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Target: scaffold0065 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 2156 - 2204
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  2156 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 2204  T

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Target: scaffold0026 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 8349 - 8397
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    ||||||||||||||||| ||| |||||| || |||||||||||||||||    
T  8349 gttatcatcaaaactcttaaagtgtaatgttaaacacattttgttccaa 8397  T

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Target: scaffold0026; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 115972 - 116020
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  115972 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 116020  T

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Target: scaffold0004 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 30530 - 30482
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  30530 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 30482  T

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Target: scaffold0004; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 220687 - 220732
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttc 51  Q
    |||||||||||||||||||||  ||||| || ||||||||||||||    
T  220687 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttc 220732  T

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Target: scaffold0004; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 377238 - 377185
Alignment:
Q  1 atctagttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||| ||||||||||||||||| |||  ||||| || |||||||||||||||||    
T  377238 atcttgttatcatcaaaactcttaaagggtaatgttaaacacattttgttccaa 377185  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 89141 - 89093
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  89141 gttatcatcaaaactctcaaagagtaatgttaaacacattttgttccaa 89093  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 12352524 - 12352476
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  12352524 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 12352476  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 23412695 - 23412647
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  23412695 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 23412647  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 21910977 - 21911024
Alignment:
Q  7 ttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    ||||||||||||||||||||  ||||| || |||||||||||||||||    
T  21910977 ttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 21911024  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 38177396 - 38177348
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  38177396 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 38177348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 25397968 - 25397921
Alignment:
Q  7 ttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||| |||| ||||| || |||||||||||||||||    
T  25397968 ttatcatcaaaactcttaaaaggtaattttaaacacattttgttccaa 25397921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 22803813 - 22803760
Alignment:
Q  1 atctagttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||| ||||||||||||||||||| |  ||||| || |||||||||||||||||    
T  22803813 atcttgttatcatcaaaactctcatagggtaatgttaaacacattttgttccaa 22803760  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 10009421 - 10009373
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  10009421 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 10009373  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 18376597 - 18376549
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  18376597 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 18376549  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 22318059 - 22318107
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  22318059 gttatcatcaaaactctcaaagggtaattttaaacacattttgttccaa 22318107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 22454643 - 22454595
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  22454643 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 22454595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 24576495 - 24576543
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||| ||||| || |||| ||||||||||||    
T  24576495 gttatcatcaaaactctcaaaaggtaatgttaaacatattttgttccaa 24576543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 38631401 - 38631449
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  38631401 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 38631449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 40782918 - 40782966
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  40782918 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 40782966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 23036145 - 23036097
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  23036145 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 23036097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 26701773 - 26701725
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  26701773 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 26701725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 32785580 - 32785532
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||||||  ||||| || |||||||||||||||||    
T  32785580 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 32785532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 12284893 - 12284940
Alignment:
Q  7 ttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||| |||| ||||| || |||||||||||||||||    
T  12284893 ttatcatcaaaactcttaaaaggtaatgttaaacacattttgttccaa 12284940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 22201461 - 22201414
Alignment:
Q  7 ttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    ||||||||||||||||||||  ||||| || |||||||||||||||||    
T  22201461 ttatcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 22201414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0411 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0411
Description:

Target: scaffold0411; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 12662 - 12709
Alignment:
Q  6 gttatcatcaaaactctcaaaatgtaatattcaacacattttgttcca 53  Q
    |||||||||||||||||||||  ||||| || ||||||||||||||||    
T  12662 gttatcatcaaaactctcaaagggtaatgttaaacacattttgttcca 12709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 16234 - 16283
Alignment:
Q  5 agttatcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    |||||||||||||||||| ||| |||||| || |||| ||||||||||||    
T  16234 agttatcatcaaaactctgaaagtgtaatgttaaacaaattttgttccaa 16283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 9794 - 9749
Alignment:
Q  9 atcatcaaaactctcaaaatgtaatattcaacacattttgttccaa 54  Q
    ||||||||||||||||||  ||||| || |||||||||||||||||    
T  9794 atcatcaaaactctcaaagggtaatgttaaacacattttgttccaa 9749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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