View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20596_high_21 (Length: 342)

Name: NF20596_high_21
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20596_high_21
NF20596_high_21
[»] chr1 (12 HSPs)
chr1 (1-325)||(6521568-6521892)
chr1 (61-326)||(6506903-6507168)
chr1 (79-326)||(6512822-6513069)
chr1 (78-325)||(6517220-6517467)
chr1 (53-170)||(47778041-47778158)
chr1 (209-325)||(47713336-47713452)
chr1 (85-323)||(47760133-47760365)
chr1 (211-325)||(47745921-47746035)
chr1 (53-150)||(47788183-47788280)
chr1 (85-323)||(47718012-47718244)
chr1 (57-150)||(47781969-47782062)
chr1 (85-170)||(6523725-6523810)
[»] scaffold0341 (2 HSPs)
scaffold0341 (61-326)||(928-1193)
scaffold0341 (61-326)||(8581-8847)
[»] chr7 (2 HSPs)
chr7 (109-254)||(722161-722305)
chr7 (234-281)||(704378-704425)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 6521892 - 6521568
Alignment:
Q  1 ttcaccactttgttaaactcaacctcatttgttgcgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521892 ttcaccactttgttaaactcaacctcatttgttgcgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttg 6521793  T
Q  101 agtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaatt 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||  |||||||||||| |||||||||    
T  6521792 agtaacgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaatt 6521693  T
Q  201 ttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagaggaattatagaaaccgtagttaata 300  Q
    ||||||||||| | ||||||||||||||||||| |||||||| |||||||||||||| |||||  | ||||||||||||||||||||||||||||| |||    
T  6521692 ttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtcagtgttgtttccataagaggaattatagaaaccgtagttgata 6521593  T
Q  301 tctttgttggaagtgagagtggata 325  Q
    |||||||||||||||||||||||||    
T  6521592 tctttgttggaagtgagagtggata 6521568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 61 - 326
Target Start/End: Original strand, 6506903 - 6507168
Alignment:
Q  61 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcgattttgac 160  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  6506903 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgac 6507002  T
Q  161 aaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6507003 aaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggt 6507102  T
Q  261 gtttatgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatag 326  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6507103 gtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatag 6507168  T

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Target: chr1; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 79 - 326
Target Start/End: Original strand, 6512822 - 6513069
Alignment:
Q  79 agaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaaggg 178  Q
    ||||| ||||||||||||| |||||| ||||||||||||   || || |  ||||| ||||| || ||||||||||||||||||||||||||||||| |     
T  6512822 agaccgaatattgaacggtatgagtaacgcaacatgcatgtatcttcatcataccaaccaatagcctcttttcgattttgacaaagttgtgttagaaaga 6512921  T
Q  179 cagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagagga 278  Q
    ||| |||||| |  | ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  6512922 cagatgaattctttatgcaattttgacaatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagagga 6513021  T
Q  279 attatagaaaccgtagttaatatctttgttggaagtgagagtggatag 326  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  6513022 attatagaaaccgtagttgatatctttgttggaagtgagagtggatag 6513069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 78 - 325
Target Start/End: Original strand, 6517220 - 6517467
Alignment:
Q  78 gagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagg 177  Q
    ||||||||||||||||||| ||||||| ||||||||||||   ||||| | |||||| |||||||||| ||||| |||||||||| ||||||||||||      
T  6517220 gagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaacgttgtgttagaaac 6517319  T
Q  178 gcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagagg 277  Q
     |||||||||||||||| |||||| |||||||||  ||||| | ||||||||| || |||||||| ||||||||||||||| ||||||||||||||||||    
T  6517320 acagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagagg 6517419  T
Q  278 aattatagaaaccgtagttaatatctttgttggaagtgagagtggata 325  Q
    | ||||||||||||||||| || |||||||||||||||||| ||||||    
T  6517420 agttatagaaaccgtagttgatttctttgttggaagtgagaatggata 6517467  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 170
Target Start/End: Complemental strand, 47778158 - 47778041
Alignment:
Q  53 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcg 152  Q
    ||||||| |||||||||||||| ||||| | |||||||||||||| |||||| ||||||||||||| |||||| | |||||| ||||||||||| |||      
T  47778158 caaaatatgcaggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttccttttt 47778059  T
Q  153 attttgacaaagttgtgt 170  Q
     ||| |||||||||||||    
T  47778058 gtttggacaaagttgtgt 47778041  T

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Target: chr1; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 209 - 325
Target Start/End: Original strand, 47713336 - 47713452
Alignment:
Q  209 catcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagaggaattatagaaaccgtagttaatatctttgtt 308  Q
    |||| ||||| ||||||||||| || |||||||| |||||||||||||||||||||  |||||||||| |||| |||||||||||||| || |   ||||    
T  47713336 catcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaaaccgtagttgatttgagtgtt 47713435  T
Q  309 ggaagtgagagtggata 325  Q
    |||||||||| ||||||    
T  47713436 ggaagtgagattggata 47713452  T

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Target: chr1; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 85 - 323
Target Start/End: Original strand, 47760133 - 47760365
Alignment:
Q  85 aatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttg 184  Q
    |||||||| ||||||||||| ||||||||||| |  ||||      |||| ||||||||||||||| | ||| ||||||||| ||| |||||  |  |||    
T  47760133 aatattgatcggtttgagtaacgcaacatgcagttatcat------accaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttg 47760226  T
Q  185 aattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagaggaattata 284  Q
    |||  | ||| ||| |  | ||| | |||||||| |||||||||||||| |||||||| |||||||||||||| ||||||  |||||||||   ||| ||    
T  47760227 aatcgttgagacaactgcggcaaacgtcgggtttaacatctcctctacagagtccaatggcgtttactttgtcagtgttttggccataagaaatattgta 47760326  T
Q  285 gaaaccgtagttaatatctttgttggaagtgagagtgga 323  Q
    |||||||||||| || |||  ||||||||| ||| ||||    
T  47760327 gaaaccgtagttgatttctgcgttggaagttagattgga 47760365  T

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Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 325
Target Start/End: Original strand, 47745921 - 47746035
Alignment:
Q  211 tcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagaggaattatagaaaccgtagttaatatctttgttgg 310  Q
    |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||  |||||||||| |||| |||||||||||||| || |   ||||||    
T  47745921 tcgggtttaacatctcctctgcagagtccaatggcgtttactttatcagtgttttggccataagagaaattgtagaaaccgtagttgatttgagtgttgg 47746020  T
Q  311 aagtgagagtggata 325  Q
    |||||||| ||||||    
T  47746021 aagtgagattggata 47746035  T

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Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 47788280 - 47788183
Alignment:
Q  53 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctttt 150  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||| ||| || || ||||| ||||  ||||| | ||||||||||||||||||||||    
T  47788280 caaaataagcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttctttt 47788183  T

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Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 323
Target Start/End: Original strand, 47718012 - 47718244
Alignment:
Q  85 aatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttg 184  Q
    |||||||| ||||||||||| ||||||||||| ||  |||      |||| ||||| ||||||||| | ||| ||||||||| ||| |||||  |  |||    
T  47718012 aatattgatcggtttgagtaacgcaacatgcagtcaacat------accaaccaatcgcttctttttggtttggacaaagttttgtgagaagaactcttg 47718105  T
Q  185 aattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttatgccataagaggaattata 284  Q
    |||  | ||| ||| || | ||| | || ||||| ||||||||||| || || ||||  |||||||||||||| ||||||  |||||||||| |||| ||    
T  47718106 aatcattgagacaacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgta 47718205  T
Q  285 gaaaccgtagttaatatctttgttggaagtgagagtgga 323  Q
    |||||||||||| || ||| |||||||||| ||| ||||    
T  47718206 gaaaccgtagttgatttctgtgttggaagttagattgga 47718244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 47782062 - 47781969
Alignment:
Q  57 ataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctttt 150  Q
    |||||| || ||||||||||| || || ||||| ||||||| ||| || || ||||||||||  ||||| | ||||||||||||||||||||||    
T  47782062 ataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatgcatttctcatcctcgtaccatccaattgcttctttt 47781969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 170
Target Start/End: Complemental strand, 6523810 - 6523725
Alignment:
Q  85 aatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcgattttgacaaagttgtgt 170  Q
    ||||| ||||||| ||| || ||||||||||||| |||||| |  ||||| ||||||||||||||| | ||| ||||||| |||||    
T  6523810 aatatggaacggtctgaataacgcaacatgcatttttcatcttcataccaaccaattgcttctttttggtttggacaaagctgtgt 6523725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 61 - 326
Target Start/End: Original strand, 928 - 1193
Alignment:
Q  61 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcgattttgac 160  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  928 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgac 1027  T
Q  161 aaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1028 aaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggt 1127  T
Q  261 gtttatgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatag 326  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1128 gtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatag 1193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 61 - 326
Target Start/End: Original strand, 8581 - 8847
Alignment:
Q  61 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcg-attttga 159  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| |||||||||||||||||||||||| |||||||    
T  8581 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgtattttga 8680  T
Q  160 caaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcgg 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8681 caaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcgg 8780  T
Q  260 tgtttatgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatag 326  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8781 tgtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaagtgagagtggatag 8847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 109 - 254
Target Start/End: Complemental strand, 722305 - 722161
Alignment:
Q  109 aacatgcattcttcatcgttgtaccatccaattgcttcttttcgattttgacaaagttgtgttagaagggcagttgaattttggaggcaattttgacaat 208  Q
    |||||||||| |||||| | |||| ||||||||||||||||||| ||||   || |||||||||||||| || |||||| || | ||||| |||||||||    
T  722305 aacatgcatttttcatcatcgtacaatccaattgcttcttttcggttttataaatgttgtgttagaaggacaattgaatatttgtggcaa-tttgacaat 722207  T
Q  209 catcgggtttgacatctcctctacacagtccaatagcgtttacttt 254  Q
    ||| | | || |||||||||||||| |||||||   ||||||||||    
T  722206 cattgagcttaacatctcctctacatagtccaaccacgtttacttt 722161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 281
Target Start/End: Complemental strand, 704425 - 704378
Alignment:
Q  234 cagtccaatagcgtttactttgtcggtgtttatgccataagaggaatt 281  Q
    |||||||||||||||||||||||| ||||||||| ||||||| |||||    
T  704425 cagtccaatagcgtttactttgtcagtgtttatgtcataagatgaatt 704378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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