View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20596_high_29 (Length: 250)
Name: NF20596_high_29
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20596_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 24600582 - 24600352
Alignment:
| Q |
1 |
ttgatacaacaaagctgccaacatagaacaaaacatcaataacagtgatctaaataattaccatactttggaattgtaaaagtctaacagcaatcggata |
100 |
Q |
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| T |
24600582 |
ttgatacaacaaagctgccaacatagaacaaaacatcaataacagtgatataaataattaccatactttggaattgtaaaagtctaacagcaatcggata |
24600483 |
T |
|
| Q |
101 |
aaacgttttccagtttgtaaaagtttcaaaaagtgtatgtaaatgagtgcctaaaaacatcaacatttttcttaaaggtgtaacctaataatatgattta |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24600482 |
aaacgttttccattttgtaaaagtttcaaaaagtgtatgtaaatgagtgcctaacaacatcaacatttttcttaaaggtgtaacct---aatatgattta |
24600386 |
T |
|
| Q |
201 |
aggacaaattgactgagatataccaatgcagttg |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
24600385 |
aggacaaattgactgagatataccaatgcagttg |
24600352 |
T |
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