View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20596_high_5 (Length: 590)

Name: NF20596_high_5
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20596_high_5
NF20596_high_5
[»] chr2 (5 HSPs)
chr2 (22-301)||(43411205-43411488)
chr2 (365-573)||(43410934-43411141)
chr2 (30-102)||(29682595-29682667)
chr2 (387-482)||(43398032-43398126)
chr2 (243-300)||(43398166-43398223)
[»] chr4 (4 HSPs)
chr4 (30-104)||(50655203-50655277)
chr4 (30-104)||(12843059-12843133)
chr4 (22-104)||(45068245-45068327)
chr4 (42-76)||(30251538-30251572)
[»] chr7 (2 HSPs)
chr7 (22-76)||(46028560-46028614)
chr7 (37-104)||(23177036-23177103)
[»] chr6 (4 HSPs)
chr6 (30-70)||(51920-51960)
chr6 (24-76)||(19290217-19290269)
chr6 (34-76)||(12834043-12834085)
chr6 (30-71)||(9557497-9557538)
[»] chr3 (1 HSPs)
chr3 (34-88)||(1762124-1762178)
[»] chr1 (3 HSPs)
chr1 (30-76)||(9644291-9644337)
chr1 (30-76)||(52372580-52372626)
chr1 (30-102)||(51871097-51871169)
[»] chr5 (3 HSPs)
chr5 (43-104)||(16154582-16154643)
chr5 (30-67)||(39774300-39774337)
chr5 (41-101)||(41650420-41650480)
[»] chr8 (2 HSPs)
chr8 (22-76)||(7656921-7656975)
chr8 (34-83)||(41926933-41926982)


Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 22 - 301
Target Start/End: Complemental strand, 43411488 - 43411205
Alignment:
Q  22 gaaaacacaaggtcattccgggacgtccagatggtccaaataacagcatgtcaaatcagaagtaaacctagcataactctcttattatcaaaatattaaa 121  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  43411488 gaaaacacaaggtcattctgggacgtccagatggtccaaataatagcacgtcaaaccagaagtaaacctagcataactctcttattatcaaaatattaaa 43411389  T
Q  122 agataataatatttctgaaccaattggttcaaacacggaaattaaatcttgttacttcgt----nnnnnnnnnttccttgttatagcaacagaaggaaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||             |||||||||||||||||||||||| ||    
T  43411388 agataataatatttctgaaccaattggttcaaacacggaaattaaatcttgttacttggtaaaaaaaaaaaaattccttgttatagcaacagaaggatat 43411289  T
Q  218 tataagattaagcgtcgtaagcatgcttttactttagggtccctcttgaagataaattctttgtctcatgcgatgcccaataac 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43411288 tataagattaagcgtcgtaagcatgcttttactttagggtccctcttgaagataaattctttgtctcatgcgatgcccaataac 43411205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 365 - 573
Target Start/End: Complemental strand, 43411141 - 43410934
Alignment:
Q  365 caatcaagtaaattgagttgaaagttgagactagatagcgcaaggcatatgctaattttggtatatgtctgtctccttttgttattcattttattttata 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43411141 caatcaagtaaattgagttgaaagttgagactagatagcgcaaggcatatgctaattttggtatatgtctgtctccttttgttattcattttattttata 43411042  T
Q  465 aaaaagggaaagaatttcattcctaattattctttttatgcatccgtatagcagagatggaatatatatgttaatgcatct---tcatctttcgtcaata 561  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||   ||||||| ||||||||    
T  43411041 aaaaagggaaagaatttcattcctaattattctttttatgcatccgtatagcagagatgga----atatgttaatgcatcttcatcatcttccgtcaata 43410946  T
Q  562 acctttctttat 573  Q
    ||||||||||||    
T  43410945 acctttctttat 43410934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 29682667 - 29682595
Alignment:
Q  30 aaggtcattccgggacgtccagatggtccaaataacagcatgtcaaatcagaagtaaacctagcataactctc 102  Q
    ||||||||||||||||| ||| ||||||||||||||| |||| ||||  ||||| ||||||| | ||||||||    
T  29682667 aaggtcattccgggacgcccaaatggtccaaataacaacatgccaaacaagaagcaaacctaacctaactctc 29682595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 482
Target Start/End: Complemental strand, 43398126 - 43398032
Alignment:
Q  387 agttgagactagatagcgcaaggcatatgctaattttggtatatgtctgtctcctttt-gttattcattttattttataaaaaagggaaagaatttc 482  Q
    ||||||||||||| |||||| |||||||||||  |||||| ||||| |||||||||||  ||||||||||||   |||||||||||||| |||||||    
T  43398126 agttgagactagagagcgcagggcatatgctatatttggt-tatgtttgtctccttttatttattcatttta-catataaaaaagggaatgaatttc 43398032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 43398223 - 43398166
Alignment:
Q  243 cttttactttagggtccctcttgaagataaattctttgtctcatgcgatgcccaataa 300  Q
    |||||| ||| | |||||| |||| ||||||||| |||||||||| ||||||||||||    
T  43398223 cttttagttttgagtcccttttgaggataaattcattgtctcatgagatgcccaataa 43398166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 50655203 - 50655277
Alignment:
Q  30 aaggtcattccgggacgtccagatggtccaaataacagcatgtcaaatcagaagtaaacctagcataactctctt 104  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||| ||| || ||||||| | ||||||||||    
T  50655203 aaggtcattacgggacgtccagatggtccaaataacagcatgccaaaccaggagcaaacctaacctaactctctt 50655277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 12843059 - 12843133
Alignment:
Q  30 aaggtcattccgggacgtccagatggtccaaataacagcatgtcaaatcagaagtaaacctagcataactctctt 104  Q
    ||||||||||||||| ||||| |||||||| ||||||  ||| |||| |||||| ||||||| | ||||||||||    
T  12843059 aaggtcattccgggaagtccaaatggtccagataacaaaatgccaaaccagaagcaaacctatcctaactctctt 12843133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 45068245 - 45068327
Alignment:
Q  22 gaaaacacaaggtcattccgggacgtccagatggtccaaataacagcatgtcaaatcagaagtaaacctagcataactctctt 104  Q
    ||||||| |||||| ||| |||||||||||||| ||||||||| | |||||||||  ||||| ||||||| | | ||||||||    
T  45068245 gaaaacaaaaggtcgttcagggacgtccagatgttccaaataaaaacatgtcaaacaagaagcaaacctaacctcactctctt 45068327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 30251538 - 30251572
Alignment:
Q  42 ggacgtccagatggtccaaataacagcatgtcaaa 76  Q
    ||||||||| |||||||||||||||||||||||||    
T  30251538 ggacgtccaaatggtccaaataacagcatgtcaaa 30251572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 46028560 - 46028614
Alignment:
Q  22 gaaaacacaaggtcattccgggacgtccagatggtccaaataacagcatgtcaaa 76  Q
    ||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||    
T  46028560 gaaaaaacaaggtcattccgggaagttcagatggtccaaataacagcatgccaaa 46028614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 23177036 - 23177103
Alignment:
Q  37 ttccgggacgtccagatggtccaaataacagcatgtcaaatcagaagtaaacctagcataactctctt 104  Q
    ||||| |||||||||||||||||||||||| ||||||||| |||||| | |||||   ||||||||||    
T  23177036 ttccgagacgtccagatggtccaaataacaacatgtcaaaccagaagaagacctaatctaactctctt 23177103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 51960 - 51920
Alignment:
Q  30 aaggtcattccgggacgtccagatggtccaaataacagcat 70  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  51960 aaggtcattacgggacgtccagatggtccaaataacagcat 51920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 19290269 - 19290217
Alignment:
Q  24 aaacacaaggtcattccgggacgtccagatggtccaaataacagcatgtcaaa 76  Q
    ||||| ||||||||||||||| |||||||| || |||||||||||||||||||    
T  19290269 aaacataaggtcattccgggatgtccagattgttcaaataacagcatgtcaaa 19290217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 12834043 - 12834085
Alignment:
Q  34 tcattccgggacgtccagatggtccaaataacagcatgtcaaa 76  Q
    ||||||||| || ||||||||||||||||||||||||| ||||    
T  12834043 tcattccggaacatccagatggtccaaataacagcatgccaaa 12834085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 9557497 - 9557538
Alignment:
Q  30 aaggtcattccgggacgtccagatggtccaaataacagcatg 71  Q
    ||||||||| ||||||||| ||||||||||||||||| ||||    
T  9557497 aaggtcatttcgggacgtcaagatggtccaaataacaacatg 9557538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 1762124 - 1762178
Alignment:
Q  34 tcattccgggacgtccagatggtccaaataacagcatgtcaaatcagaagtaaac 88  Q
    ||||||| ||||||||||||||||||||||||| |||| ||||  ||||||||||    
T  1762124 tcattccaggacgtccagatggtccaaataacaacatgccaaacaagaagtaaac 1762178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 9644337 - 9644291
Alignment:
Q  30 aaggtcattccgggacgtccagatggtccaaataacagcatgtcaaa 76  Q
    |||||| ||||||||| |||||||||||||||||||| |||||||||    
T  9644337 aaggtcgttccgggacatccagatggtccaaataacaacatgtcaaa 9644291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 52372626 - 52372580
Alignment:
Q  30 aaggtcattccgggacgtccagatggtccaaataacagcatgtcaaa 76  Q
    ||||||||||||||| ||||||||||||||||||| |||||| ||||    
T  52372626 aaggtcattccgggaggtccagatggtccaaataatagcatgccaaa 52372580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 51871169 - 51871097
Alignment:
Q  30 aaggtcattccgggacgtccagatggtccaaataacagcatgtcaaatcagaagtaaacctagcataactctc 102  Q
    ||||||||| |||| |||||| |||||||| ||||||||||| ||||  ||||| ||||||| | ||||||||    
T  51871169 aaggtcatttcgggtcgtccaaatggtccagataacagcatgccaaacaagaagcaaacctaacctaactctc 51871097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 16154582 - 16154643
Alignment:
Q  43 gacgtccagatggtccaaataacagcatgtcaaatcagaagtaaacctagcataactctctt 104  Q
    |||||||| ||||||||||||| |||||| ||||| ||||| ||||||| | ||||||||||    
T  16154582 gacgtccaaatggtccaaataatagcatgccaaataagaagcaaacctaacctaactctctt 16154643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 39774337 - 39774300
Alignment:
Q  30 aaggtcattccgggacgtccagatggtccaaataacag 67  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  39774337 aaggtcgttccgggacgtccagatgatccaaataacag 39774300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 41650480 - 41650420
Alignment:
Q  41 gggacgtccagatggtccaaataacagcatgtcaaatcagaagtaaacctagcataactct 101  Q
    |||||||||| ||||||||||| |||||||| |||| |||||| | ||||| | |||||||    
T  41650480 gggacgtccaaatggtccaaatgacagcatgccaaaccagaagcagacctaacctaactct 41650420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 7656921 - 7656975
Alignment:
Q  22 gaaaacacaaggtcattccgggacgtccagatggtccaaataacagcatgtcaaa 76  Q
    ||||| || |||||||||||||||||  |||||||| |||| |||||||||||||    
T  7656921 gaaaaaactaggtcattccgggacgtttagatggtctaaatgacagcatgtcaaa 7656975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 41926982 - 41926933
Alignment:
Q  34 tcattccgggacgtccagatggtccaaataacagcatgtcaaatcagaag 83  Q
    |||||||| || ||||| |||||||||||||||||||| |||| ||||||    
T  41926982 tcattccgagaagtccaaatggtccaaataacagcatgccaaaccagaag 41926933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University