View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20596_high_6 (Length: 575)
Name: NF20596_high_6
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20596_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 527; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 9 - 559
Target Start/End: Complemental strand, 50386493 - 50385943
Alignment:
| Q |
9 |
gacattttgcattaaactatagtataacaatgcaatcaagtttcttttctttgaatgtgtgacaaaagaaaatgacaagtatacatcactacaaagaaaa |
108 |
Q |
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| T |
50386493 |
gacatattgcattaaattattgtataacaatgcaatcaagtttcttttctttgaatgtgtgacaaaagaaaatgacaagtatacatcactacaaagaaaa |
50386394 |
T |
|
| Q |
109 |
acaaacacacataaagctacaattatactttataatatgtatgacaaattttaaatttcatgtttacacttatatgatctatgatctataatatcgtcct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50386393 |
acaaacacacataaagctacaattatactttataatatgtatgacaaattttaaatttcatgtttacacttatatgatctatgatctataatatcgtcct |
50386294 |
T |
|
| Q |
209 |
taaccatttgtcctaattctaagttgtcgcaacatgctgctgttgaccaactttgtcatcttcctctgtcttttctacgttctttacctccaccatttca |
308 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50386293 |
taaccatttgtcctaattccaagttgtcgcaacatgctgctgttgaccaactttgtcatcttcctctgtcttttctacgttctttacctccaccatttca |
50386194 |
T |
|
| Q |
309 |
gcttcttccctgtatctcttgtatatgtcacctttgtaaaactttctggtcctagccaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctg |
408 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50386193 |
gcttcttccctatatctcttgtatatgtcacctttgtaaaactttctggtcctagccaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctg |
50386094 |
T |
|
| Q |
409 |
taataataatgaaagataacttgtaacaatcaacaccaacacaattcaattcctgcccttctattctttgctttccaagtgcttccaattgcttctttgc |
508 |
Q |
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| T |
50386093 |
tgataataatgaaagataacttgtaacaatcaacaccaacacaattcaattcctgcccttctattctttgctttccaagtgcttccaattgcttctttgc |
50385994 |
T |
|
| Q |
509 |
ttctttgtcatacaaatgaccagcgatcttcacattaagcacatataatcc |
559 |
Q |
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| T |
50385993 |
ttctttgtcatacaaatgaccagcgatcttcacattaagcacatataatcc |
50385943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 77 - 559
Target Start/End: Complemental strand, 50394856 - 50394362
Alignment:
| Q |
77 |
aaaatgacaagtatacatcactacaaagaaaaacaaacacacataaagctaca-attatactttataatatgtatgacaa-attttaaatttcatgttta |
174 |
Q |
| |
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||||||| || |||||||||| ||||||||| | ||||||||| | |||| |||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
50394856 |
aaaatgaaaattatacatcacgggaaagaaaaattagcacacataatgttacatattatactgtataatatgtatgacaacattttaaatttcatgttta |
50394757 |
T |
|
| Q |
175 |
cactta--tatga-tctatgatctata------atatcgtccttaaccatttgtcctaatt-ctaagttgtcgcaacatgctgctgttgaccaactttgt |
264 |
Q |
| |
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|||||| ||||| ||||||||||||| ||||| |||||| ||| ||||| ||| |||||||||| | ||||||||| ||||||||| ||||| |
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| T |
50394756 |
cacttaattatgaatctatgatctatataattaatatcatccttatccacttgtcttaaaaactaagttgtcaccacatgctgccgttgaccaattttgt |
50394657 |
T |
|
| Q |
265 |
catcttcctctgtcttttctacgttctttacctccaccatttcagcttcttccctgtatctcttgtatatgtcacctttgtaaaactttctggtcctagc |
364 |
Q |
| |
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||||||| |||||||| | |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
50394656 |
catcttcttctgtcttacccacgttctttacctccaccatttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttctagtcctaga |
50394557 |
T |
|
| Q |
365 |
caccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtaataataatgaaagataacttgtaacaatcaacaccaacacaattcaattcctgc |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
50394556 |
caccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtaataataatgaaagataacttgaaacaatcaacaccaacacaattcaattcatgc |
50394457 |
T |
|
| Q |
465 |
ccttctattctttgctttccaagtgcttccaattgcttctttgcttctttgtcatacaaatgaccagcgatcttcacattaagcacatataatcc |
559 |
Q |
| |
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||||||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50394456 |
ccttctattctatgctttccaagtgcttccaattgtttcttagcctctttgtcatacaaatgaccagtgatcttcacattaagcacatataatcc |
50394362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 184 - 556
Target Start/End: Complemental strand, 50391465 - 50391091
Alignment:
| Q |
184 |
gatctatgatctataatatcgtccttaaccatttgtcctaattctaagttgtcgcaacatgc---tgctgttgaccaactttgtcatcttcctctgtctt |
280 |
Q |
| |
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|||||||||||||| |||| |||||||||||||| |||| |||||||||||| | ||||| ||||| || |||||||||||| |||| |||||||| |
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| T |
50391465 |
gatctatgatctatgatatgatccttaaccatttgccctatttctaagttgtcaccgcatgccgatgctgctg-ccaactttgtcaccttcttctgtctt |
50391367 |
T |
|
| Q |
281 |
ttctacgttctttacctccaccatttcagcttcttccctgtatctcttgtatatgtcacctttgtaaaactttctggtcctagccaccaaaataagtgaa |
380 |
Q |
| |
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| | |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| | |
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| T |
50391366 |
tcccacgttctttacctccaccatttcagcttcttctctgtacctcttgtatatgtcacctttgtaaaactttcttgtcctagcgaccaaaataaggtta |
50391267 |
T |
|
| Q |
381 |
acaacagcaccaaaaaatgttgcagctgtaataataatgaaagataacttgtaacaatcaacaccaacacaattcaattcctgcccttctattctttgct |
480 |
Q |
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| T |
50391266 |
acaacagcaccaaagaaagttgcagctgcaataataatgaaagataacttgaaacaatcaacgccaacacaattcaattcctgcccttctattctttgct |
50391167 |
T |
|
| Q |
481 |
ttccaagtgcttccaattgcttctttgcttctttgtcatacaaatgaccagcgatcttcacattaagcacatataa |
556 |
Q |
| |
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||||||||||||||||||| |||| ||||||||||||||||||||||||| |||| |||||||||||||||||| |
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|
| T |
50391166 |
ttccaagtgcttccaattgtttctcagcttctttgtcatacaaatgaccagtgatcgccacattaagcacatataa |
50391091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 494 - 559
Target Start/End: Complemental strand, 50408037 - 50407972
Alignment:
| Q |
494 |
caattgcttctttgcttctttgtcatacaaatgaccagcgatcttcacattaagcacatataatcc |
559 |
Q |
| |
|
||||||| |||| |||||||||||||| ||||||||||||| | | |||||||| | ||||||||| |
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| T |
50408037 |
caattgcctcttagcttctttgtcatataaatgaccagcgaccctaacattaagaaaatataatcc |
50407972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 424
Target Start/End: Complemental strand, 50408207 - 50408107
Alignment:
| Q |
324 |
ctcttgtatatgtcacctttgtaaaactttctggtcctagccaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtaataataatgaaag |
423 |
Q |
| |
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||||||||||| |||||||| |||||||| | || || ||||| ||||||||||||| || |||||||| || || || || || ||||||||||||| |
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| T |
50408207 |
ctcttgtatatatcacctttataaaacttatttgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgataataatgaaag |
50408108 |
T |
|
| Q |
424 |
a |
424 |
Q |
| |
|
| |
|
|
| T |
50408107 |
a |
50408107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 50394893 - 50394862
Alignment:
| Q |
16 |
tgcattaaactatagtataacaatgcaatcaa |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
50394893 |
tgcattaaactatagtataacaatgcaatcaa |
50394862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 416 - 556
Target Start/End: Complemental strand, 34297438 - 34297297
Alignment:
| Q |
416 |
aatgaaagataacttgtaacaatcaacaccaacacaattcaattcctgcccttctattctttgctt-tccaagtgcttccaattgcttctttgcttcttt |
514 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||| |||| || | ||| | || |||||||||||||||||| || || ||||| || |
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| T |
34297438 |
aatgaaagataacttcaaacaatcaacaccaatacaattcaattcatgccttttttttcctacgttgtccaagtgcttccaattgattattagcttcctt |
34297339 |
T |
|
| Q |
515 |
gtcatacaaatgaccagcgatcttcacattaagcacatataa |
556 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||||||||||| |
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|
| T |
34297338 |
gtcatacaaatgaccagtgattgtaacattaagcacatataa |
34297297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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