View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20596_high_8 (Length: 446)
Name: NF20596_high_8
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20596_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 133 - 440
Target Start/End: Original strand, 1764614 - 1764925
Alignment:
| Q |
133 |
agaggatataatattttgagaaacccactagctaataacactgatttaactaccactctattaataatgagtgtatgatattttcattagggacaatcta |
232 |
Q |
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| T |
1764614 |
agaggatataatattttgagaaacccactagctaataacactgatttaactaccactctattaataatgagtgtatgatattttcattagggacaatcta |
1764713 |
T |
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| Q |
233 |
-tttgtaaaacgatcgatcgatctattacatnnnnnnnntgtagagatgatctatannnnnnnnnngaaaggaagagagatgatctatataaatattgga |
331 |
Q |
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| T |
1764714 |
ttttgtaaagcgatcgatcgatctattacgtaaaaaaaatgtagagatgatctata-tttttttttgaaaggaagagagatgatttatataaatatttga |
1764812 |
T |
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| Q |
332 |
tataatttttattttaagtag----tatattggctagaaatttatctttaagtaactaagtgggaaatgaaatcagagttcaactcccattcactgctta |
427 |
Q |
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| T |
1764813 |
tataatttttattttaagtagtatatatattggctagaaatttatctttaagtaactaagtgtgaaatgaaagcacagttcaacccccattcactcctta |
1764912 |
T |
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| Q |
428 |
tacagtataatct |
440 |
Q |
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|||| | |||||| |
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| T |
1764913 |
tacaatgtaatct |
1764925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 1764500 - 1764575
Alignment:
| Q |
19 |
tgacaacctgtaacaaaataatgaatctgagtatattattagcagaaggatcaatttgatgtgctaaatggagata |
94 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1764500 |
tgacaacctgtaacaaaataatgaatctgagtatattattagcagaaggatcaatttgatgtgctaaatggagata |
1764575 |
T |
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