View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20596_high_9 (Length: 437)
Name: NF20596_high_9
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20596_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Complemental strand, 50921874 - 50921464
Alignment:
| Q |
19 |
gcttgatcaacggaaagatgaatcaatagaacaaactttcaaaggtgttgctagccattttcgaaaagtattctctgagcttgtaaaggggggcaatgct |
118 |
Q |
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| T |
50921874 |
gcttgatcaacggaaagatgaatcagtagaacgaactttcaaaggtgttgctagccattttcgaagagtattctctgagcttgtaaaggggggcaatgct |
50921775 |
T |
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| Q |
119 |
gatctggttatgatgatgaagaagaaggtttgtggttatcaaataacgtcttagattctcccatcaatttttgtgattgcattggataggaaaagatgac |
218 |
Q |
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| T |
50921774 |
gatctggttatgatgatgaagaagaaggtttgtggttatcaaataacgtcttagattctcccatcaatttttgtgattgcattggataggaaaagatgac |
50921675 |
T |
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| Q |
219 |
gctttatagcttgttacccgtgtttcatgtcgcatatgtgtggaaaatattatagcaagagagaattattatttcagtagaagggcactccctatatagg |
318 |
Q |
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| T |
50921674 |
gctttatagcttgttacccgtgtttcatgtcgcatatgtgtggaaaatattatagcaagagagaattattatttcagtagaagggcactccttatatagg |
50921575 |
T |
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| Q |
319 |
aggaatacattatgtcaacttctcaaattaaggagtgatataatcaataataaaaataaggtatcaatgcagctttgggactttttggccccccactatt |
418 |
Q |
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| T |
50921574 |
aggaatacattatgtcaacttctcaaattaaggagtgatataatcaataataaaaataaggtatcaatgcagctttgggactttttggccccccactatt |
50921475 |
T |
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| Q |
419 |
tttgatgatgt |
429 |
Q |
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| T |
50921474 |
tttgatgatgt |
50921464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 23 - 377
Target Start/End: Original strand, 20743139 - 20743495
Alignment:
| Q |
23 |
gatcaacggaaagatgaatcaatagaacaaactttcaaaggtgttgctagccattttcgaaaagtattctctgagcttgtaaaggggggcaatgctgatc |
122 |
Q |
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| T |
20743139 |
gatcaacggaaggatgaatcaatagagcgcactttcaaaggtgttgctaggcatttccgagaagtattctctgaacttgtacaggggggccatggtcatc |
20743238 |
T |
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| Q |
123 |
tggttatgatgatgaagaagaaggtttgtggttatcaaataacgtcttagattctcccatcaatttttgtgattgcattggataggaaaagatgacgctt |
222 |
Q |
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| T |
20743239 |
tggtt---atgatgaagaagaaggtttgttgctagtaattaatgtcttagcttctcccatcaatttttgtgattgcattggatagagaaaggtgatgctt |
20743335 |
T |
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| Q |
223 |
tata----gcttgttacccgtgtttcatgtcgcatatgtgtggaaaatattatagcaagagagaattattatttcagtagaagggcactccctatatagg |
318 |
Q |
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| T |
20743336 |
aatagtttgtttgttatatgtgttgtgtgttgtataattgttcaaaataatatagcaacagagaattattatttcagtagaagagcactccttttatagg |
20743435 |
T |
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| Q |
319 |
aggaatacat-tatgtcaacttctcaaattaaggagtgatataatcaataataaaaataa |
377 |
Q |
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| T |
20743436 |
agaaacacttaaatgtcaacttctcaaatttaggagtgatatattcaacaataaaaataa |
20743495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 363
Target Start/End: Original strand, 20744319 - 20744365
Alignment:
| Q |
317 |
ggaggaatacattatgtcaacttctcaaattaaggagtgatataatc |
363 |
Q |
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| T |
20744319 |
ggaggaatacataatgtcaactcctcaaattaatgagtgatataatc |
20744365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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