View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20596_low_1 (Length: 879)
Name: NF20596_low_1
Description: NF20596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20596_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 749; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 749; E-Value: 0
Query Start/End: Original strand, 42 - 863
Target Start/End: Complemental strand, 46768386 - 46767543
Alignment:
| Q |
42 |
cctcaagactaaactcccaattctgaacaccaaagctaagccacctctaactcccatcatcacatcacattt----------------------atgaaa |
119 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
46768386 |
cctcaagactaaactcccaatcctgaacaccaaagctaagccacctctaactcctatcatcacatcacatttgtgtacaattatctctctttttatgaaa |
46768287 |
T |
|
| Q |
120 |
atgcttttaaaacaataccctgaagtaattattgtggattgcagagcacttagtttaccctcctcagtcctcaccagtaacttctgttggctgtatgcat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46768286 |
atgcttttaaaacaataccctgaagtaattattgtggattgcagagcacttagtttaccctcctcagtcctcaccagtaacttctgttggctgtatgcat |
46768187 |
T |
|
| Q |
220 |
tgtgacatatttagtaaccagttagtattacacaactaattttttgatattgcatgttatgtatccacattttcttcttaaatattattgttgtgttttg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46768186 |
tgtgacatatttagtaaccagttagtattacacaactaattttttgatattgcatgttatgtatccacattttcttcttaaatattattgttgtgttttg |
46768087 |
T |
|
| Q |
320 |
atgttatgtttagttttataaaaggtgtatttaacagttgacagacaacactgatgtatgtctattgtgatactgtgatttactgatttactgttaagtg |
419 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46768086 |
atgttatgtttagttttataaaaggtgtatttaacagttgacagacaacactgatgtatgtctcttgtgatactgtgatttactgatttactgttaagtg |
46767987 |
T |
|
| Q |
420 |
tttttgttattcaataaccaaacacaacaaattaaaattcataactgacgtaaattctttcgacaaatttctcatgcgcattgcacgcgttctcaagttc |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
46767986 |
tttttgttattcaataaccaaacacaacaaattaaaattcataactgacgtaaattctttcgacaaatttctcacgcgcattgcacgggttctcaagttc |
46767887 |
T |
|
| Q |
520 |
acacgcatttgagtggtatgaagtggctctctagaaggcatacagacaaagtagttgaactgttgagatctcatgaatgaatgattcttaactgtgacat |
619 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46767886 |
acacgcatttgagtggtatgaagtggctctctagaaggcatacagacaaagtagttgaactgttgagatctcatgaatgaatgattcttaactgtgacat |
46767787 |
T |
|
| Q |
620 |
gagcaaaaatcagccacaaagttgaataggaactagtattactcaaataatgatttagcattagtctttttctgcaactgttattgtttctacttttctt |
719 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46767786 |
gagcaaaaatcagccacaaaattgaataggaactagtattactcaaataatgatttagcattagtctttttctgcaactgttattgtttctacttttctt |
46767687 |
T |
|
| Q |
720 |
agggatcttaaatagatacacacaaaacaacaaaacagatgataatgtaaagtagctaaagtccacctagtcaaaagtaaacaccagcagcagcaattga |
819 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46767686 |
agggatcttaaatagatacacacaaaacaacaaaacagatgataatgtaaagtagctaaagtccacctagtcaaaagtaaacaccagcagcagcaattga |
46767587 |
T |
|
| Q |
820 |
aaggaatgtaaatagcatcttcaaagagttgtagggccttattg |
863 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46767586 |
aaggaatgtaaatagcatcttcaaagagttgtagggccttattg |
46767543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 277 - 398
Target Start/End: Complemental strand, 35045775 - 35045656
Alignment:
| Q |
277 |
tatgtatccacattttcttcttaaatattattgttgtgttttgatgttatgtttagttttataaaaggtgtatttaacagttgacagacaacactgatgt |
376 |
Q |
| |
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||||||| |||||| | |||| ||| || |||||||||||||||||| ||||||||||||||||||| || ||| |||||| |||||||| |||||| |
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| T |
35045775 |
tatgtattcacattgttttctaaaacatcattgttgtgttttgatgtgatgtttagttttataaaagagctacttaccagttg--agacaacattgatgt |
35045678 |
T |
|
| Q |
377 |
atgtctattgtgatactgtgat |
398 |
Q |
| |
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| ||||| |||| || |||||| |
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| T |
35045677 |
aagtctaatgtgttattgtgat |
35045656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 310 - 400
Target Start/End: Complemental strand, 31527846 - 31527756
Alignment:
| Q |
310 |
ttgtgttttgatgttatgtttagttttataaaaggtgtatttaacagttgacagacaacactgatgtatgtctattgtgatactgtgattt |
400 |
Q |
| |
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||||||||||||||| ||| |||||||||||||| |||| || ||| ||| | || ||| |||||||||||| |||||||||||||||| |
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| T |
31527846 |
ttgtgttttgatgttttgtgtagttttataaaagatgtacttcacaaatgatacaccacagggatgtatgtctaatgtgatactgtgattt |
31527756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 40161150 - 40161106
Alignment:
| Q |
299 |
aaatattattgttgtgttttgatgttatgtttagttttataaaag |
343 |
Q |
| |
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||||||||||| |||||||||||||||| ||||| |||||||||| |
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| T |
40161150 |
aaatattattgatgtgttttgatgttatctttagctttataaaag |
40161106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 299 - 360
Target Start/End: Original strand, 28843235 - 28843296
Alignment:
| Q |
299 |
aaatattattgttgtgttttgatgttatgtttagttttataaaaggtgtatttaacagttga |
360 |
Q |
| |
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||||||||| | |||||||| || |||||||||| |||||||||| ||| ||||||||||| |
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| T |
28843235 |
aaatattatagatgtgttttaatattatgtttagatttataaaagaggtacttaacagttga |
28843296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 259 - 342
Target Start/End: Complemental strand, 43539041 - 43538958
Alignment:
| Q |
259 |
ttttttgatattgcatgttatgtatccacattttcttcttaaatattattgttgtgttttgatgttatgtttagttttataaaa |
342 |
Q |
| |
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||||||||||| |||| ||||| || |||||| |||||||| ||||||| |||||||| |||||| ||||| ||||||||| |
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| T |
43539041 |
ttttttgatatagcatattatggattcacattgctttcttaaacattattgacgtgttttggtgttatatttagctttataaaa |
43538958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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